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Full Data Pipeline

Full Pipeline

Tracking

Status: Open.

#93 In linkml/dm-bip;

· amc-corey-cox opened on May 26, 2025

Update file I/O for Harmonica

Data Annotation

Status: Open.

#91 In linkml/dm-bip;

· twhetzel opened on May 21, 2025

Add Containerization with Docker

Project Setup

Status: Open.

#90 In linkml/dm-bip;

· amc-corey-cox opened on May 21, 2025

Data Annotation

Data Annotation

Tracking

Status: Open.

#89 In linkml/dm-bip;

· amc-corey-cox opened on May 21, 2025

Add Jupyter Notebooks

Project Setup

Status: Open.

#88 In linkml/dm-bip;

· amc-corey-cox opened on May 20, 2025

Move annotation tool to new directory location

Data Annotation

Status: Open.

#86 In linkml/dm-bip;

· twhetzel opened on May 19, 2025

Add tooling to incorporate outputs from SchemaAutomator and Schemasheets

Schema GenerationGenerate schema as dataset comes in - LLM + LinkMLGenerate schema as dataset comes in - LLM + LinkML

Status: Open.

#80 In linkml/dm-bip;

· twhetzel opened on May 10, 2025

Add Harmonica to pipeline

Schema GenerationGenerate schema as dataset comes in - LLM + LinkMLGenerate schema as dataset comes in - LLM + LinkML

Status: Open.

#79 In linkml/dm-bip;

· twhetzel opened on May 10, 2025

Data and Schema Validation

Tracking

Validation

Status: Open.

#75 In linkml/dm-bip;

· amc-corey-cox opened on May 6, 2025

Fix missing Enums identified in Validation

Schema GenerationGenerate schema as dataset comes in - LLM + LinkMLGenerate schema as dataset comes in - LLM + LinkML

Status: Open.

#67 In linkml/dm-bip;

· amc-corey-cox opened on Apr 7, 2025

Create Initial Synthetic Data

Datasets

Status: Open.

#52 In linkml/dm-bip;

· amc-corey-cox opened on Mar 5, 2025

Add Toy Data Schema

Data TransformationData transformationData transformation

Status: Open.

#51 In linkml/dm-bip;

· amc-corey-cox opened on Mar 4, 2025