Skip to content

Pull requests: microbiomedata/nmdc-runtime

New pull request New
13 Open 701 Closed
13 Open 701 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Implement MongoCommandProcessor class as replacement for 400-line _run_mdb_cmd function
#1566 opened Jul 23, 2026 by eecavanna Collaborator • Draft
17 tasks
1
@eecavanna
Load NCBITaxon via ontology-loader 0.2.3 fast-initial path
#1562 opened Jul 22, 2026 by turbomam Member Loading…
2
13
Update minter to mint dot-integer-suffixed IDs for workflow executions
#1526 opened Jun 9, 2026 by eecavanna Collaborator Loading…
8 of 17 tasks
1
@eecavanna
7
Fix TypeError crash in changesheet validation when document ID does not exist
#1448 opened Apr 30, 2026 by Copilot AI • Draft
3 of 15 tasks
1
@eecavanna
Add env triad validation to runtime
#1423 opened Apr 3, 2026 by sierra-moxon Member • Draft
7 of 14 tasks
1
Disable MongoDB authentication for local development/testing
#1394 opened Feb 16, 2026 by eecavanna Collaborator Loading…
7 of 17 tasks
1
@eecavanna
45
[WIP] Migrate to pymongo.asynchronous
#1235 opened Sep 22, 2025 by dwinston Collaborator • Draft
4 of 17 tasks
1
@dwinston
4
Document API endpoint parameters and endpoints with descriptions and examples for Swagger UI
#1228 opened Sep 19, 2025 by Copilot AI • Draft
1
@eecavanna
4
Add middleware that logs HTTP response time to server console
#1214 opened Sep 12, 2025 by eecavanna Collaborator Loading…
7 of 17 tasks
1
@eecavanna
5
Enable referential integrity checking within perform_mongo_updates op
#1174 opened Aug 27, 2025 by eecavanna Collaborator • Draft
6 of 17 tasks
1
@eecavanna
3
Migrate from MongoClient to AsyncMongoClient
#1145 opened Aug 14, 2025 by eecavanna Collaborator • Draft
17 tasks
1
@eecavanna
2
Fix DagsterInvalidConfigError in translate_metadata_submission_to_nmdc_schema_database test
#1067 opened Jul 13, 2025 by Copilot AI • Draft
1
@eecavanna
6
Fix Mermaid diagrams illegibility in dark mode on User Journeys page
#1066 opened Jul 13, 2025 by Copilot AI • Draft
1
@eecavanna
3
ProTip! Exclude everything labeled bug with -label:bug.