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25.09.0

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@fm3 fm3 released this 27 Aug 08:21
· 225 commits to master since this release
25.09.0
a9ceb54

Highlights

  • Added the possibility to rotate the planes in ortho view. While rotated, volume annotation is disabled. #8614
  • Implement Authentication with Passkeys. #8393
  • Added support for training and running AI instance segmentation models from WK UI. #8849

Added

  • Implement Authentication with Passkeys. #8393
  • Added the possibility to rotate the planes in ortho view. While rotated, volume annotation is disabled. #8614
  • A user can now update the email address of their account by themselves. #8671
  • The dashboard dataset search now supports searching for dataset ids. #8791
  • Added the config option features.registerToDefaultOrgaEnabled (default true) to allow admins to disable the normal registration flow to the default organization. If it is false, SSO or invites are required. #8807
  • Editable mapping (aka supervoxel proofreading) annotations can now be downloaded and the edited edges are included in a zarr3-based format. Note that re-upload is not yet implemented. #8816
  • Added support for training and running AI instance segmentation models from WK UI. #8849
  • Added support for the layersToLink format as the webknossos-libs currently send it (datasetId as datasetName) #8861
  • Added the config option silhouette.cookieAuthenticator.sameSite to control the relevant cookie header in order to allow iframe usage if desired for a particular WEBKNOSSOS instance. #8862
  • Updated backend dependencies for improved stability and performance. #8863
  • Add tracingstore route to export agglomerate graph as protobuf, to be used by the python client. #8872

Changed

  • Before starting a neuron segmentation with Evaluation Settings enabled, it is checked that a useful bounding box was selected and that some skeletons exist within the annotation, preventing the job from failing. #8678
  • A new directory is no longer created for new remote or composed datasets. #8708
  • Refactored dataset settings and child tabs as React functional components. #8719
  • Updated the UI of the dataset settings to be more accessible. #8732
  • Updated React Router from v5.x to v6.x. #8739
  • The backend can now return the update actions of an annotation per version in a truncated format to avoid too large responses. This does not impact restoring versions of annotations. #8757
  • Changed that the d/f switching setting no longer affects movements other than moving via the d/f keyboard shortcuts. #8786
  • Explicitly scanning datasets on disk is now faster for multi-organization setups. #8791
  • Integrated "Change Email" functionality into Account Settings #8840
  • When adding a new dataset from UI modal, the organization's default team is now automatically pre-selected for dataset access permissions. #8847
  • Zarr streaming a volume annotation will now respond with errors (500) if the underlying data encountered errors. #8853
  • datasource-properties.jsons with wkwResolutions now do not need the cubeLength parameter anymore. #8854
  • Added protection against server outages by limiting the number of update actions in an annotation update transaction to 1000000. #8866
  • Remove left over occurrence of SELECT * statement in backend. Added assertions to CI to ensure that the SELECT * statement is not used in the backend. #8867

Fixed

  • Fixed that the skeleton tab was not always reflecting the active tree. This makes it easier to navigate between comments and trees, for example. #8689
  • Reject bucket request responses with unexpected size and try to reload those buckets automatically. #8776
  • Fixed a bug where moving folders in the dashboard would sometimes fail with an SQL error. #8793
  • Fixed loading meshes for remote neuroglancer datasets if they need credentials. #8795
  • Fixed a bug where reading large zarr3 layer attachments would sometimes fail for some values due to an integer overflow. #8798
  • Fixed a bug where the zarr.json included in volume annotation zarr downloads would miss the compression codec even though the chunks were compressed. #8800
  • When renaming skeletons or skeleton groups, it is now possible to select a part of the name. #8801
  • The view to change ones email address is now available in the top right dropdown menu of the navbar. #8806
  • In transformed datasets, the natively rendered layer is now encoded in the sharing link. This prevents jumping to a different position when opening the link. #8809
  • Fixed viewing a dataset zoomed far out which has rotations configured in the dataset settings Data Source tab. #8819
  • Fixed that the floodfilling tool in 2D mode and without a bounding box restriction was only filling a slice of the selected area. #8828
  • Fixed a bug that impacted some proofreading interactions when e.g. splitting an agglomerate. #8830
  • Fixed a bug where hdf5 attachments explicitly mentioned in the datasource-properties.json would not be readable if they have an absolute path but no file:// prefix. #8832
  • Fixed a bug where layer attachments with relative paths would not be read correctly. #8834
  • Fix loading segment statistics like segment volume and segment bounding box for N-Dimensional datasets and annotations. #8837
  • WK crashing when changing the color of an empty segment group. #8868

Removed

  • An administrator of the organization can no longer update a users email address. This has to be done by the user themselves. #8671

Breaking Changes

  • Datasets are now referenced by their ID instead of the combination of the organization and the directory name. #8708
  • Newly uploaded datasets do not use the wkwResolutions property anymore, but instead use mags like imported remote datasets. #8708
  • Interacting with newly created datasets requires libraries to support API version of 10 or higher. #8708
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