fix(snakemake): update Snakemake to 9.1.0 and snakemake-storage-plug… #495
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…in-xrootd to 0.4.1 for Python >=3.11 - Update Snakemake to 9.1.0 for Python >=3.11 to remove the unmaintained datrie dependency, fixing installation issues with modern GCC. - Update snakemake-storage-plugin-xrootd to 0.4.1 for compatibility with Snakemake 9.x. - Keep Snakemake 7.32.4 and pulp for Python <3.11 for backward compatibility. - All tests pass locally (`186 passed, 4 xfailed`), matching CI results. References: - pytries/datrie#101 - pytries/datrie#99 - snakemake/snakemake#3176 - snakemake/snakemake#3105 - snakemake/snakemake#2970 - https://github.com/snakemake/snakemake/releases/tag/v8.29.1 Closes reanahub#494
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Summary
This PR updates the Snakemake and snakemake-storage-plugin-xrootd dependencies in
reana-commonsto resolve installation issues caused by the unmaintaineddatrielibrary on modern Linux systems (GCC >=14).Closes #494.
Problem
reana-clientor any component depending onreana-commons[snakemake]fails on modern Linux distributions due to compilation errors in thedatriedependency.datrieis unmaintained (pytries/datrie#101), and although a fix exists (pytries/datrie#99), it has not been merged.datriedependency in snakemake/snakemake#3176, available since v8.29.1.Solution
9.1.0(used in snakemake-storage-plugin-xrootd) for Python >=3.11 to remove thedatriedependency.snakemake-storage-plugin-xrootdto0.4.1for compatibility with Snakemake 9.1.0.Testing
reana-commonstests pass locally:reana-clientand ran all tests:roofitexample from reanahub: finished successfully.References
Impact
This PR fix the installation of any component depending on
reana-commons[snakemake]on modern Linux distributions and affects reproducibility and maintainability for new users and contributors.This will fix the reana-client installing error
Let me know if I'm wrong, clarify any detail or if more tests are needed.
Closes #494