Team MIRA - BioMedIA

All

32 repositories

mammo-label-bias
Public
[FAIMI 2025] Code for "Exploring the interplay of label bias with subgroup size and separability: A case study in mammographic density classification"
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Oct 29, 2025Oct 29, 2025
flow-ssn
Public
[ICCV 2025] Code for "Flow Stochastic Segmentation Networks"
machine-learning deep-learning artificial-intelligence medical-imaging neural-networks segmentation normalizing-flows generative-ai
Python
•1•16•1•0•Updated Jul 31, 2025Jul 31, 2025
calibration_under_shifts
Public
Code for the paper "Where are we with calibration under dataset shift in image classification?"
calibration image-classification uncertainty-quantification distribution-shift dataset-shift
Python
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MIT License
•0•1•0•0•Updated Jul 11, 2025Jul 11, 2025
grc-net
Public
Geometric and Radiomics features for Cardiovascular disease classification - STACOM2025 - MICCAI2025
Python
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Apache License 2.0
•0•3•0•0•Updated Jul 1, 2025Jul 1, 2025
CF-Seg
Public
CF-Seg: Counterfactuals Meet Segmentation
MIT License
•0•1•1•0•Updated Jun 28, 2025Jun 28, 2025
seg-cft
Public
This is the repository for our seg-cft work accepted in MICCAI 2025
0•1•1•0•Updated Jun 25, 2025Jun 25, 2025
shift_identification
Public
Code for 'Automatic dataset shift identification to support root cause analysis of AI performance drift', MICCAI 2025
medical-imaging distribution-shift dataset-shift distribution-shift-detection dataset-shift-identification
Jupyter Notebook
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MIT License
•1•7•0•0•Updated Jun 19, 2025Jun 19, 2025
counterfactual-contrastive
Public
Code for the paper "Robust representations for image classification via counterfactual contrastive learning" (Medical Image Analysis) and "Counterfactual contra…
medical-imaging classification robustness counterfactual simclr contrastive-learning dinov2 counterfactual-contrastive-learning
Python
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MIT License
•2•22•1•0•Updated Jun 16, 2025Jun 16, 2025
mammo-artifacts
Public
Code for "Radio-opaque artefacts in digital mammography: Automatic detection and analysis of downstream effects" - ISBI 2025 paper
embed artefacts mammography
Python
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MIT License
•1•5•0•0•Updated May 24, 2025May 24, 2025
causal-gen
Public
(ICML 2023) High Fidelity Image Counterfactuals with Probabilistic Causal Models
python machine-learning computer-vision neural-network pytorch uncertainty medical-imaging generative-model causality counterfactual
Python
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MIT License
•10•68•1•0•Updated Mar 24, 2025Mar 24, 2025
mammoth
Public
mammot - model assurance and model monitoring toolkit
Apache License 2.0
•0•1•0•0•Updated Jan 15, 2025Jan 15, 2025
attribute-amplification
Public
Official repository for the MICCAI 2024 paper 'Mitigating attribute amplification in counterfactual image generation'
Python
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MIT License
•1•1•0•0•Updated Sep 30, 2024Sep 30, 2024
demystifying-diffusion
Public
variational-inference generative-models diffusion-models
TeX
•3•20•0•0•Updated Jan 15, 2024Jan 15, 2024
medmesh
Public
Code repository for the paper 'A comparative study of graph neural networks for shape classification in neuroimaging'
Jupyter Notebook
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Apache License 2.0
•1•6•0•0•Updated Nov 11, 2023Nov 11, 2023
upa
Public
Unsupervised prediction alignment for automatic correction of acquisition shift in image classification
Jupyter Notebook
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MIT License
•0•7•0•0•Updated Oct 24, 2023Oct 24, 2023
subgroup-separability
Public
[MICCAI 2023] "The Role of Subgroup Separability in Group-Fair Medical Image Classification"
Jupyter Notebook
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MIT License
•2•7•0•0•Updated Oct 20, 2023Oct 20, 2023
atlas-istn
Public
Code release for Atlas-ISTN
Python
•
Apache License 2.0
•2•8•0•0•Updated Oct 20, 2023Oct 20, 2023
cxr-foundation-bias
Public
Official repository for 'Risk of Bias in Chest Radiography Deep Learning Foundation Models'
Jupyter Notebook
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Apache License 2.0
•3•12•1•0•Updated Sep 27, 2023Sep 27, 2023
deepscm
Public
Repository for Deep Structural Causal Models for Tractable Counterfactual Inference
deep-learning causal-inference normalizing-flows variational-autoencoders counterfactuals
Jupyter Notebook
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MIT License
•55•294•7•2•Updated Jul 6, 2023Jul 6, 2023
blast-ct
Public
Brain Lesion Analysis and Segmentation Tool for Computed Tomography
Python
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Apache License 2.0
•32•74•2•0•Updated Apr 21, 2023Apr 21, 2023
masf
Public
Domain Generalization via Model-Agnostic Learning of Semantic Features
Python
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Apache License 2.0
•18•149•3•2•Updated Mar 24, 2023Mar 24, 2023
istn
Public
Image-and-Spatial Transformer Networks
deep-learning medical-imaging image-registration spatial-transformer-networks
Python
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Apache License 2.0
•26•112•1•4•Updated Feb 15, 2023Feb 15, 2023
chexploration
Public
Official repository for 'Algorithmic encoding of protected characteristics in chest X-ray disease detection models'
Jupyter Notebook
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Apache License 2.0
•5•24•0•0•Updated Feb 15, 2023Feb 15, 2023
sos-vae
Public
Official Code for "Structured Uncertainty in the Observation Space of Variational Autoencoders"
uncertainty generative-model vae observation-space
Python
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Apache License 2.0
•0•4•0•0•Updated Oct 28, 2022Oct 28, 2022
counterfactual_axiomatic_soundness
Public
Python
•0•1•0•0•Updated Jul 21, 2022Jul 21, 2022
brain-age-cnn
Public
0•1•0•0•Updated Jul 26, 2021Jul 26, 2021
atmil
Public
0•3•0•0•Updated Jul 9, 2021Jul 9, 2021
oak2
Public
Random forests for 2D and 3D image analysis
machine-learning medical-imaging random-forests
C++
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Apache License 2.0
•1•1•0•0•Updated Aug 28, 2020Aug 28, 2020
dixonfix
Public
Tool for correcting fat-water swaps in Dixon MRI
C++
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Apache License 2.0
•1•4•0•0•Updated Aug 28, 2020Aug 28, 2020
drop2
Public
drop2 - intensity-based image registration
C++
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Other
•3•38•0•0•Updated Aug 28, 2020Aug 28, 2020