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    510 repositories

    • phylophoenix

      Public
      🔥🌿🐦🔥PhyloPHoeNIx: Pipeline for relatedness determination using PHoeNIx output.
      Python
      •
      Apache License 2.0
      •0•9•4•1•Updated Dec 14, 2025Dec 14, 2025

    • phoenix

      Public
      🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      •
      Apache License 2.0
      •35•87•12•0•Updated Dec 14, 2025Dec 14, 2025

    • dibbs-text-to-code

      Public
      Python
      •
      Apache License 2.0
      •0•1•43•3•Updated Dec 14, 2025Dec 14, 2025

    • stimulant_opioid_algorithm_medical_codes_R

      Public
      HTML
      •
      Apache License 2.0
      •3•4•0•0•Updated Dec 13, 2025Dec 13, 2025

    • eMKF

      Public
      SAS
      •
      Apache License 2.0
      •4•4•0•0•Updated Dec 13, 2025Dec 13, 2025

    • Opioid_SUD_MHI_MedCodes

      Public
      Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      •7•7•0•0•Updated Dec 13, 2025Dec 13, 2025

    • dibbs-ecr-refiner

      Public
      The DIBBs eCR Refiner reduces eICR and RR files down to only the most useful, necessary information to alleviate performance and storage burden on eCR data pipelines and disease surveillance systems and bring focus to pertinent data for a given reportable condition.
      XSLT
      •
      Apache License 2.0
      •3•4•55•4•Updated Dec 13, 2025Dec 13, 2025

    • prime-reportstream

      Public
      ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      fhirpublic-healthcivic-techhl7
      Kotlin
      •
      Creative Commons Zero v1.0 Universal
      •44•82•1.2k•108•Updated Dec 13, 2025Dec 13, 2025

    • prime-fhir-converter

      Public
      The CDC’s Pandemic-Ready Interoperability Modernization Effort (PRIME) Java based FHIR conversion library
      fhirhl7v2fhir-converter
      Kotlin
      •
      Apache License 2.0
      •5•14•2•1•Updated Dec 13, 2025Dec 13, 2025

    • nccdphp-drh-mmria

      Public
      C#
      •
      GNU General Public License v3.0
      •0•2•0•2•Updated Dec 12, 2025Dec 12, 2025

    • cdc-open-viz

      Public
      CDC OpenViz is a library of React packages for data visualization.
      reactvisualizationdatavisualization-library
      TypeScript
      •
      Apache License 2.0
      •30•46•0•5•Updated Dec 12, 2025Dec 12, 2025

    • MicrobeTrace

      Public
      The Visualization Multitool for Molecular Epidemiology and Bioinformatics
      bioinformaticsgenomicsphylogenetic-treesphylogeneticsepidemiologynetwork-visualizationhivcdcphylogenomicsphylogeny
      TypeScript
      •44•95•74•5•Updated Dec 12, 2025Dec 12, 2025

    • prime-simplereport

      Public
      SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      graphqlspring-bootreactjsterraform
      Java
      •
      Creative Commons Zero v1.0 Universal
      •63•61•160•19•Updated Dec 12, 2025Dec 12, 2025

    • cfa-cloudops

      Public
      Python
      •
      Apache License 2.0
      •1•2•6•2•Updated Dec 12, 2025Dec 12, 2025

    • ixa

      Public
      Rust
      •
      Apache License 2.0
      •6•19•62•7•Updated Dec 12, 2025Dec 12, 2025

    • cfa-epimodel

      Public
      R
      •
      Apache License 2.0
      •2•1•2•0•Updated Dec 12, 2025Dec 12, 2025

    • sg-monitoring-report

      Public
      Code used for the Surveillance Group monitoring report.
      JavaScript
      •
      Apache License 2.0
      •0•0•7•0•Updated Dec 12, 2025Dec 12, 2025

    • ixa-epi-isolation

      Public
      Rust
      •
      Apache License 2.0
      •2•1•36•3•Updated Dec 12, 2025Dec 12, 2025

    • dibbs-ecr-viewer

      Public
      DIBBS eCR Viewer
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •2•12•117•11•Updated Dec 12, 2025Dec 12, 2025

    • mira-oxide

      Public
      Rust
      •
      Apache License 2.0
      •1•5•0•2•Updated Dec 12, 2025Dec 12, 2025

    • pyrenew-hew

      Public
      Models and infrastructure for forecasting respiratory disease hospitalizations using wastewater data with PyRenew.
      Python
      •
      Apache License 2.0
      •3•16•51•3•Updated Dec 12, 2025Dec 12, 2025

    • ShareIT-Act

      Public
      This repositories contain a set of documentation to satisfy H.R.9566 - SHARE IT Act.
      governanceshareit
      Creative Commons Zero v1.0 Universal
      •1•3•2•1•Updated Dec 12, 2025Dec 12, 2025

    • cfa-dataops

      Public
      Python
      •
      Apache License 2.0
      •1•3•4•1•Updated Dec 12, 2025Dec 12, 2025

    • dibbs-query-connector

      Public
      A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN
      nextjsfhirpublichealthfhir-clientdibbs
      PLpgSQL
      •
      Creative Commons Zero v1.0 Universal
      •6•16•68•17•Updated Dec 12, 2025Dec 12, 2025

    • survpopdata

      Public
      Apache License 2.0
      •0•0•6•2•Updated Dec 12, 2025Dec 12, 2025

    • cfa-catalog-pub

      Public
      Python
      •
      Apache License 2.0
      •0•0•5•2•Updated Dec 12, 2025Dec 12, 2025

    • covid19-forecast-hub

      Public
      A repository run by the US CDC to collect forecasts of incident COVID-19 hospital admissions and emergency department visits.
      R
      •
      Apache License 2.0
      •29•20•17•1•Updated Dec 12, 2025Dec 12, 2025

    • irma-core

      Public
      A tool to aid virus sequencing and accelerate IRMA.
      bioinformaticsncird-idcdc-influenza-division
      Rust
      •
      Apache License 2.0
      •0•12•0•0•Updated Dec 12, 2025Dec 12, 2025

    • NEDSS-Helm

      Public
      This repository is created for NEDSS Helm charts.
      Smarty
      •
      Apache License 2.0
      •6•2•0•25•Updated Dec 12, 2025Dec 12, 2025

    • NEDSS-Infrastructure

      Public
      HCL
      •
      Apache License 2.0
      •7•4•0•2•Updated Dec 12, 2025Dec 12, 2025