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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 818 162

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 179 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 333 57

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 180 38

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 688 112

Repositories

Showing 10 of 386 repositories
  • pic-sure-hpds Public
    hms-dbmi/pic-sure-hpds’s past year of commit activity
    Java 3 Apache-2.0 7 0 2 Updated Feb 5, 2026
  • avillachlab-jenkins-bdc-etl Public
    hms-dbmi/avillachlab-jenkins-bdc-etl’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Feb 5, 2026
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 5 1 2 Updated Feb 4, 2026
  • OncoThreads Public

    OncoThreads longitudinal cancer genomics visualization project.

    hms-dbmi/OncoThreads’s past year of commit activity
    JavaScript 10 MIT 1 3 4 Updated Feb 4, 2026
  • pic-sure-bdc-infrastructure Public
    hms-dbmi/pic-sure-bdc-infrastructure’s past year of commit activity
    HCL 5 Apache-2.0 1 0 2 Updated Feb 4, 2026
  • uchimata-py Public

    Visualization of 3D genome models in notebooks

    hms-dbmi/uchimata-py’s past year of commit activity
    Python 4 MIT 0 2 1 Updated Feb 4, 2026
  • uchimata Public

    Library for visualizing three-dimensional genome models and associated genomics data

    hms-dbmi/uchimata’s past year of commit activity
    TypeScript 7 MIT 0 4 4 Updated Feb 4, 2026
  • pic-sure-baseline-release-control Public
    hms-dbmi/pic-sure-baseline-release-control’s past year of commit activity
    0 5 0 0 Updated Feb 4, 2026
  • pic-sure Public

    PIC-SURE API

    hms-dbmi/pic-sure’s past year of commit activity
    Java 6 Apache-2.0 3 0 2 Updated Feb 4, 2026
  • service-workbench-on-aws Public Forked from awslabs/service-workbench-on-aws

    A platform that provides researchers with one-click access to collaborative workspace environments operating across teams, universities, and datasets while enabling university IT stakeholders to manage, monitor, and control spending, apply security best practices, and comply with corporate governance.

    hms-dbmi/service-workbench-on-aws’s past year of commit activity
    JavaScript 6 Apache-2.0 121 0 0 Updated Feb 4, 2026
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