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branch lengths are lost when rerooting a tree imported with read.iqtree()

Status: Open.

#134 In YuLab-SMU/treeio;

· andreaniml opened on Sep 2, 2025

<code>read.mega</code> / <code>read.beast</code> returns incorrect tip node data when reading nexus file with non-consecutive translation table keys

Status: Open.

#132 In YuLab-SMU/treeio;

· Fan-iX opened on Mar 23, 2025

write.beast function is returning a tree with wrong annotation

Status: Open.

#131 In YuLab-SMU/treeio;

· lfreitasl opened on Feb 18, 2025

Missing dependency on fs

Status: Open.

#129 In YuLab-SMU/treeio;

· mmokrejs opened on Nov 28, 2024

Error using as.treedata() for pml object

Status: Open.

#127 In YuLab-SMU/treeio;

· gdunshea opened on Aug 21, 2024

read.nextstrain.json fails on divergence trees

Status: Open.

#126 In YuLab-SMU/treeio;

· CecileTK opened on Jul 9, 2024

phyloXML and missing branch lengths

Status: Open.

#124 In YuLab-SMU/treeio;

· jvolkening opened on Feb 2, 2024

[feature request] <code>text=</code> argument for <code>read.raxml</code> function

Status: Open.

#122 In YuLab-SMU/treeio;

· Fan-iX opened on Jan 10, 2024

read.raxml() parsing error

Status: Open.

#121 In YuLab-SMU/treeio;

· gunjanpandey opened on Dec 17, 2023

root function loses tip.label and node.label

Status: Open.

#120 In YuLab-SMU/treeio;

· jayoung opened on Dec 1, 2023

Issue with drop.tip function in removing node C from tree structure A-&gt;B-&gt;C

Status: Open.

#119 In YuLab-SMU/treeio;

· moqi111 opened on Dec 1, 2023

read.iqtree and regular bootstrap

Status: Open.

#114 In YuLab-SMU/treeio;

· LPDagallier opened on Oct 13, 2023