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@Fraunhofer-ITMP

Fraunhofer-Institut für Translationale Medizin und Pharmakologie ITMP

ScreeningPort | Schnackenburgallee 114, 22525 Hamburg

Welcome to Fraunhofer ITMP Hamburg!

This is the official GitHub organization section representing the Hamburg site of the Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP).

The Hamburg site is a leading research hub specializing in small-molecule drug discovery, high-throughput screening, and medical data science. We combine cutting-edge laboratory techniques with advanced computational analysis to innovate diagnostics and therapies, especially for immune-mediated, neurodegenerative, and infectious diseases.

About Us

  • Mission: Advancing health through innovative solutions by integrating drugs, devices, diagnostics, and data (“Health Research in 4D”).
  • Expertise:
    • High-throughput screening systems and diverse compound libraries
    • Complex in vitro test systems using pluripotent stem cells and organoids, including blood-brain barrier models
    • Advanced medical data science infrastructure featuring the Fraunhofer Edge Cloud, knowledge graphs, machine learning, and FAIR data principles
    • Agile interdisciplinary teams in Stem Cell Biology, High-Throughput Screening, Infection Biology, and Medical Data Science
  • Collaborations: Strong partnerships with University Medical Center Hamburg-Eppendorf (renal and neuroimmunology research), Bernhard Nocht Institute for Tropical Medicine (structural virology), DESY (protein structure elucidation), and involvement in EU-OPENSCREEN and EU research projects for drug repurposing, and many more.

As an active member of the open-science and FAIR data communities, we vouch to align our projects with these principles to foster transparency and reproducibility.

Our Areas of Innovation

Fraunhofer ITMP is organized in 9 cross-site and cross-divisional innovation areas, which provide a transdisciplinary and flexible approach to research using new technologies, disease and treatment concepts. The agile teams span the research divisions Drug Discovery, Preclinical and Clinical Research, where new disease related research concepts developed and examined. Please find more here.

Our Research Divisions

Fraunhofer ITMP is organized in 3 cross-site research divisions.

Drug Discovery Preclinical Research Clinical Research

Data Science Toolkit: All Our Tools in One Place

A collective front-face and an interactive playground of our repositories can be found here.

Collaboration & Community

We encourage open, international collaboration with academia, industry, and healthcare partners to translate research into better patient outcomes.

Visit our official website for more information on the Hamburg site.

Join us as we innovate for a healthier tomorrow!

Contact Us

Fraunhofer Institute for Translational Medicine and Pharmacology ITMP
Discovery Research ScreeningPort, VolksparkLabs
Schnackenburgallee 114
22525 Hamburg, Germany

Phone: +49 40 303764-0
Fax: +49 40 303764-100

Visit our website

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  1. E3_binder_Model E3_binder_Model Public

    Source code and dataset for paper titled "Pharmacophore-based ML model to predict ligand selectivity for E3 ligase binders"

    R 2

  2. mpox-kg mpox-kg Public

    Source code and data repository for paper titled "Monkeypox Knowledge Graph: A comprehensive representation embedding chemical entities and associated biology of Monkeypox "

    Jupyter Notebook 4 1

  3. alister alister Public

    ALISTER

    R 2 1

  4. kgg kgg Public

    An automated workflow to create disease-specific Knowledge Graphs

    Jupyter Notebook 19 4

  5. patent-clinical-candidate-characteristics patent-clinical-candidate-characteristics Public

    Source code and data repository for paper titled "Exploring SureChEMBL from a drug discovery perspective".

    Jupyter Notebook 3 1

  6. NTD NTD Public

    Source code and data for paper titled "Pharmacological Signatures of Neglected Tropical Disease Drugs: Implications for One Health"

    Jupyter Notebook

Repositories

Showing 10 of 25 repositories
  • KNIME Public

    KNIME workflows for High Content Screening and High-Throughput Screening analysis

    Fraunhofer-ITMP/KNIME’s past year of commit activity
    0 MIT 1 0 0 Updated Sep 17, 2025
  • datascience_toolkit Public

    ITMP Datascience Toolkit

    Fraunhofer-ITMP/datascience_toolkit’s past year of commit activity
    HTML 1 MIT 0 0 1 Updated Sep 16, 2025
  • kgg Public

    An automated workflow to create disease-specific Knowledge Graphs

    Fraunhofer-ITMP/kgg’s past year of commit activity
    Jupyter Notebook 19 MIT 4 0 0 Updated Aug 21, 2025
  • .github Public

    README page of Fraunhofer ITMP

    Fraunhofer-ITMP/.github’s past year of commit activity
    0 0 0 0 Updated Jul 30, 2025
  • cluster_mst Public Forked from apahl/cluster_mst

    Compound clustering as MST

    Fraunhofer-ITMP/cluster_mst’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Jul 23, 2025
  • Fraunhofer-ITMP/advise_workshop’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated May 15, 2025
  • e3_models Public
    Fraunhofer-ITMP/e3_models’s past year of commit activity
    Python 0 0 0 0 Updated May 14, 2025
  • PLD Public

    Sample the modelling effort on Phospholipidosis together with Karolinska data

    Fraunhofer-ITMP/PLD’s past year of commit activity
    HTML 1 MIT 0 0 0 Updated Mar 12, 2025
  • PEMT Public

    Source code and data files for "PEMT: A patent enrichment tool with applicability in drug discovery"

    Fraunhofer-ITMP/PEMT’s past year of commit activity
    Python 16 MIT 4 2 0 Updated Jan 27, 2025
  • NTD Public

    Source code and data for paper titled "Pharmacological Signatures of Neglected Tropical Disease Drugs: Implications for One Health"

    Fraunhofer-ITMP/NTD’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 3, 2024

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