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[Feature request] Add Foldseek structural alphabet substitution matrix

feature-request

#93

· cvigilv opened

on Feb 16, 2026

[Feature Request] Can BioAlignment support gap_incentive ?

feature-request

#92

· SeqCrafter opened

on Dec 5, 2025

Add a `cigar` method and `BioAlignments.Alignment` constructor for XAM.jl optimisation

feature-request

#87

· CiaranOMara opened

on Oct 15, 2022

Friendly request to `@deprecate` API changes via semver

#84

· dehann opened

on Aug 24, 2022

Refactor tests

#81

· kescobo opened

on Jun 16, 2022

Weird error with `AffineGapScoreModel()`

#79

· jakobnissen opened

on Jun 15, 2022

Alignment of 2 LongAminoAcidSeq with AffineGapScoreModel from docs goes out of bounds

#75

· kool7d opened

on May 26, 2022

Extract start and end positions from a PairwiseAlignment

feature-request

#73

· rohanmaddamsetti opened

on Mar 28, 2022

`AlignmentAnchor` method signature

#69

· CiaranOMara opened

on Feb 12, 2022

OP_BACK has no use?

#63

· jakobnissen opened

on Jan 27, 2022

The API of accessing fields of BioAlignments

#58

· jakobnissen opened

on Oct 26, 2021

What does the two integer fields in `Alignment` do?

#57

· jakobnissen opened

on Oct 13, 2021