Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
Repositories
- aind-smartspim-classification Public
Code for classifying the cell candidate outputs from aind-smartspim-segmentation within smartspim pipeline
AllenNeuralDynamics/aind-smartspim-classification’s past year of commit activity - segmentation-skeleton-metrics Public
A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.
AllenNeuralDynamics/segmentation-skeleton-metrics’s past year of commit activity - harp.device.quad-dac Public
0364: This repository contains the hardware, firmware, and software related to the Harp quad DAC
AllenNeuralDynamics/harp.device.quad-dac’s past year of commit activity - aind-ophys-nwb Public
Write NWB files for data generated with two-photon ophys pipelines (currently multiplane only)
AllenNeuralDynamics/aind-ophys-nwb’s past year of commit activity - aind-exaspim-data-transformation Public
A library to convert imaris (ims) files to zarr v3 in the compression step of the aind-data-transfer-service upload process from AIND network to S3 bucket.
AllenNeuralDynamics/aind-exaspim-data-transformation’s past year of commit activity - Aind.Experiment.MotorObservatory-Fip Public
An experiment that combines multi-camera behavior recordings with fiber photometry
AllenNeuralDynamics/Aind.Experiment.MotorObservatory-Fip’s past year of commit activity
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