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docs/about.html

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<strong>Last updated:</strong> 2020-06-12
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<strong>Last updated:</strong> 2020-06-29
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<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsgithubcomworkflowrworkflowruseR2020tree28e7671b402ddfa1a0a8df553202858b961b1d5etargetblank28e7671a"> <span class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span> <strong>Repository version:</strong> <a href="https://github.com/workflowr/workflowr-useR2020/tree/28e7671b402ddfa1a0a8df553202858b961b1d5e" target="_blank">28e7671</a> </a>
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<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsgithubcomworkflowrworkflowruseR2020tree5cef3ebfb9d98153e77efe4ef7556f9ed6f0f15atargetblank5cef3eba"> <span class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span> <strong>Repository version:</strong> <a href="https://github.com/workflowr/workflowr-useR2020/tree/5cef3ebfb9d98153e77efe4ef7556f9ed6f0f15a" target="_blank">5cef3eb</a> </a>
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Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
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</p>
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<p>
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The results in this page were generated with repository version <a href="https://github.com/workflowr/workflowr-useR2020/tree/28e7671b402ddfa1a0a8df553202858b961b1d5e" target="_blank">28e7671</a>. See the <em>Past versions</em> tab to see a history of the changes made to the R Markdown and HTML files.
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The results in this page were generated with repository version <a href="https://github.com/workflowr/workflowr-useR2020/tree/5cef3ebfb9d98153e77efe4ef7556f9ed6f0f15a" target="_blank">5cef3eb</a>. See the <em>Past versions</em> tab to see a history of the changes made to the R Markdown and HTML files.
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</p>
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Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use <code>wflow_publish</code> or <code>wflow_git_commit</code>). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
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John Blischak
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2020-06-12
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Build site.
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docs/challenge.html

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Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
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The results in this page were generated with repository version <a href="https://github.com/workflowr/workflowr-useR2020/tree/28e7671b402ddfa1a0a8df553202858b961b1d5e" target="_blank">28e7671</a>. See the <em>Past versions</em> tab to see a history of the changes made to the R Markdown and HTML files.
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The results in this page were generated with repository version <a href="https://github.com/workflowr/workflowr-useR2020/tree/5cef3ebfb9d98153e77efe4ef7556f9ed6f0f15a" target="_blank">5cef3eb</a>. See the <em>Past versions</em> tab to see a history of the changes made to the R Markdown and HTML files.
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Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use <code>wflow_publish</code> or <code>wflow_git_commit</code>). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
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Add demo of running all chunks in a saved workspace.
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<p>The analysis purposefully contains various issues that make it difficult to reproduce. Open the file <code>spotify.Rmd</code> by clicking on it in the RStudio Files pane. Click the Knit button to re-run the analysis and find the first issue.</p>
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<p>The analysis purposefully contains various issues that make it difficult to reproduce. Open the file <code>spotify.Rmd</code> by clicking on it in the RStudio Files pane. In the Editor pane, click on “Run” and then click on “Run All” to execute all the code chunks in the R console (Ctrl/Cmd+Alt+Enter). Note that the code completes and produces a plot in the Plots pane.</p>
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<p>Next click the Knit button to re-build the document. This time the code fails due to an error. The difference is because RStudio knits Rmd files in a clean R session. In contrast, the R session currently running in the R console already had all the analysis variables created because the workspace was restored. This is why you want to avoid saving your workspace: it can make it appear that your code is running when it is actually contains errors. In fact, if you scroll back up through the R console history, you’ll see that some errors did occur. But the analysis still completed since the intermediate objects were already available.</p>
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<p>To fix the workspace issue, first go to the Files pane and delete the file <code>.RData</code> that contains the saved workspace. Second, go to “Tools” -&gt; “Global Options…”. Unclick the checkbox “Restore .RData into workspace at startup” and change the dropdown “Save workspace to to .RData on exit” to Never.</p>
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<p>Now you can proceed to fix the analysis one error at a time. Click on Knit to produce the first error. Then click on “Output” to see the lines in the Rmd file where the error occurred.</p>
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Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
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The results in this page were generated with repository version <a href="https://github.com/workflowr/workflowr-useR2020/tree/28e7671b402ddfa1a0a8df553202858b961b1d5e" target="_blank">28e7671</a>. See the <em>Past versions</em> tab to see a history of the changes made to the R Markdown and HTML files.
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The results in this page were generated with repository version <a href="https://github.com/workflowr/workflowr-useR2020/tree/5cef3ebfb9d98153e77efe4ef7556f9ed6f0f15a" target="_blank">5cef3eb</a>. See the <em>Past versions</em> tab to see a history of the changes made to the R Markdown and HTML files.
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Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use <code>wflow_publish</code> or <code>wflow_git_commit</code>). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
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2020-06-12
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[21] yaml_2.2.1 compiler_4.0.2 htmltools_0.5.0 knitr_1.29 </code></pre>
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Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
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The results in this page were generated with repository version <a href="https://github.com/workflowr/workflowr-useR2020/tree/28e7671b402ddfa1a0a8df553202858b961b1d5e" target="_blank">28e7671</a>. See the <em>Past versions</em> tab to see a history of the changes made to the R Markdown and HTML files.
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The results in this page were generated with repository version <a href="https://github.com/workflowr/workflowr-useR2020/tree/5cef3ebfb9d98153e77efe4ef7556f9ed6f0f15a" target="_blank">5cef3eb</a>. See the <em>Past versions</em> tab to see a history of the changes made to the R Markdown and HTML files.
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Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use <code>wflow_publish</code> or <code>wflow_git_commit</code>). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
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Replace HTML slides with Google Slides presentation.
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John Blischak
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2020-06-17
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Start prerequisites page.
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<td>
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Rmd
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<td>
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<a href="https://github.com/workflowr/workflowr-useR2020/blob/59a47268eddf265fdb83c5f0a73fd0c97f89b7eb/analysis/index.Rmd" target="_blank">59a4726</a>
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John Blischak
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</td>
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2020-06-17
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Start outline of creating workflowr website
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html
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<a href="https://rawcdn.githack.com/workflowr/workflowr-useR2020/759ea05aa038be9ed7ff27d3419d43daa6d204e1/docs/index.html" target="_blank">759ea05</a>
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</td>
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<td>
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John Blischak
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</td>
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2020-06-12
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Build site.
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</tr>
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Rmd
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<td>
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<a href="https://github.com/workflowr/workflowr-useR2020/blob/43117cbfa7c0a6a96ff0888794dec88e70f2d229/analysis/index.Rmd" target="_blank">43117cb</a>
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<td>
@@ -498,11 +583,14 @@ <h1 class="title toc-ignore">Create and share reproducible code with R Markdown
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</div>
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<p>Before the tutorial:</p>
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<li><a href="prerequisites.html">Prerequisites</a></li>
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<li><a href="setup.html">Setup</a></li>
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</ul>
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<p>During the tutorial:</p>
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<ul>
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<li><a href="https://docs.google.com/presentation/d/1z6hhjGSUW7HiZUYFOg3XqVRn3y9Tabo0kMdGMh8iPr4/edit?usp=sharing">How can I make my R code more reproducible for myself and others?</a></li>
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<li><a href="challenge.html">Reproducibility challenge</a></li>
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<li><a href="workflowr.html">Create a workflowr project</a></li>
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</ul>
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<p>After the tutorial (optional content):</p>
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<ul>

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