Commit 3664a34
Add saturation-aware analysis to birefringence optimization
The birefringence optimization workflow now detects and reports pixel
saturation in source images during paired acquisition. When birefringent
tissue pushes pixel values to the detector ceiling, I(+)-I(-) is
underestimated, potentially recommending incorrect angles.
Changes:
- Track per-angle saturation fraction on both +theta and -theta images
- Saturation-aware optimal angle selection with non-saturated alternative
- Red X markers on saturated angles in visualization plots
- Saturation analysis section in summary, JSON, and CSV output
- Sat% column in results tables with * markers for saturated angles
- Warnings and remediation recommendations when saturation detected
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>1 parent c6c1e71 commit 3664a34
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