Repositories list

• jbrowse-components

  Public
  Source code for JBrowse 2, a modern React-based genome browser

  visualizationbioinformaticsgenomics+ 1jbrowse

  TypeScript

  •

  Apache License 2.0

  •68•240•269•23•Updated Jun 4, 2025Jun 4, 2025

• Apollo3

  Public
  JBrowse 2 plugin for editing annotations on an Apollo server

  TypeScript

  •

  Apache License 2.0

  •4•12•64•4•Updated Jun 4, 2025Jun 4, 2025

• ucsc-hub-js

  Public
  read and write UCSC track and assembly hub files in node or the browser

  TypeScript

  •

  MIT License

  •2•5•5•1•Updated Jun 2, 2025Jun 2, 2025

• indexedfasta-js

  Public
  Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi

  TypeScript

  •

  MIT License

  •4•12•0•0•Updated Jun 2, 2025Jun 2, 2025

• jbrowse-plugin-msaview

  Public
  multiple sequence alignment browser plugin for JBrowse 2

  TypeScript

  •

  Apache License 2.0

  •0•5•5•0•Updated Jun 2, 2025Jun 2, 2025

• react-msaview

  Public
  A multiple sequence alignment viewer

  TypeScript

  •

  MIT License

  •3•23•27•0•Updated May 31, 2025May 31, 2025

• nclist-js

  Public
  Read JBrowse v1 nested containment list feature stores from modern JS

  TypeScript

  •

  MIT License

  •0•0•0•1•Updated May 28, 2025May 28, 2025

• twobit-js

  Public
  Read .2bit files with pure JS. Works in node or webpack.

  TypeScript

  •

  MIT License

  •2•4•0•0•Updated May 28, 2025May 28, 2025

• bam-js

  Public
  Parse BAM and BAM index files in javascript for node and the browser

  TypeScript

  •

  MIT License

  •9•23•9•2•Updated May 28, 2025May 28, 2025

• jbrowse-react-app-vanillajs-demo

  Public
  HTML

  •0•0•0•0•Updated May 27, 2025May 27, 2025

• jbrowse-react-linear-genome-view-vanillajs-demo

  Public
  HTML

  •0•0•0•0•Updated May 27, 2025May 27, 2025

• jbrowse-react-linear-genome-view-vite-demo

  Public
  TypeScript

  •1•0•0•0•Updated May 27, 2025May 27, 2025

• jbrowse-react-linear-genome-view-rsbuild-demo

  Public
  TypeScript

  •0•0•0•0•Updated May 27, 2025May 27, 2025

• jbrowse-react-linear-genome-view-nextjs-demo

  Public
  TypeScript

  •1•1•1•0•Updated May 27, 2025May 27, 2025

• jbrowse-react-linear-genome-view-farm-demo

  Public
  TypeScript

  •0•0•0•0•Updated May 27, 2025May 27, 2025

• jbrowse-react-linear-genome-view-cra5-demo

  Public
  TypeScript

  •0•0•0•1•Updated May 27, 2025May 27, 2025

• jbrowse-react-circular-genome-view-nextjs-demo

  Public
  TypeScript

  •0•0•0•0•Updated May 27, 2025May 27, 2025

• jbrowse-react-circular-genome-view-cra5-demo

  Public
  TypeScript

  •0•0•0•0•Updated May 27, 2025May 27, 2025

• jbrowse-react-app-rsbuild-demo

  Public
  TypeScript

  •0•0•0•0•Updated May 27, 2025May 27, 2025

• jbrowse-react-app-vite-demo

  Public
  TypeScript

  •0•0•0•0•Updated May 27, 2025May 27, 2025

• jbrowse-react-app-farm-demo

  Public
  TypeScript

  •0•0•0•0•Updated May 27, 2025May 27, 2025

• jbrowse-react-app-nextjs-demo

  Public
  TypeScript

  •0•1•1•0•Updated May 27, 2025May 27, 2025

• jbrowse-react-app-cra5-demo

  Public
  TypeScript

  •0•0•0•0•Updated May 27, 2025May 27, 2025

• jbrowse-plugin-protein3d

  Public
  3D protein structure visualizer in jbrowse 2 - WIP

  TypeScript

  •0•0•3•1•Updated May 27, 2025May 27, 2025

• jbrowse

  Public
  JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

  bioinformaticsgenomicsbiology+ 3genome-annotationgenome-browserprotein-annotation

  JavaScript

  •

  Other

  •198•469•147•11•Updated May 27, 2025May 27, 2025

• generic-filehandle2

  Public
  modernization of the original generic-filehandle, no Buffer polyfill needed

  TypeScript

  •0•0•0•1•Updated May 26, 2025May 26, 2025

• trix-js

  Public
  Read UCSC Trix indexes in pure JavaScript

  TypeScript

  •

  Apache License 2.0

  •2•0•1•2•Updated May 26, 2025May 26, 2025

• tabix-js

  Public
  Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser

  TypeScript

  •

  MIT License

  •5•14•2•0•Updated May 26, 2025May 26, 2025

• bgzf-filehandle

  Public
  Nodejs filehandle for reading bgzip+.gzi compressed files

  TypeScript

  •

  MIT License

  •4•7•5•2•Updated May 26, 2025May 26, 2025

• vcf-js

  Public
  High performance Variant Call Format (VCF) parser in pure JavaScript

  TypeScript

  •

  MIT License

  •5•24•2•1•Updated May 24, 2025May 24, 2025