WIP - workflow output #440
Workflow file for this run
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| name: nf-core AWS full size tests | |
| # This workflow is triggered on PRs opened against the main/master branch. | |
| # It can be additionally triggered manually with GitHub actions workflow dispatch button. | |
| # It runs the -profile 'test_full' on AWS batch | |
| on: | |
| workflow_dispatch: | |
| pull_request_review: | |
| types: [submitted] | |
| release: | |
| types: [published] | |
| jobs: | |
| run-platform: | |
| name: Run AWS full tests | |
| # run only if the PR is approved by at least 2 reviewers and against the master/main branch or manually triggered | |
| if: github.repository == 'nf-core/seqinspector' && github.event.review.state == 'approved' && (github.event.pull_request.base.ref == 'master' || github.event.pull_request.base.ref == 'main') || github.event_name == 'workflow_dispatch' || github.event_name == 'release' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Set revision variable | |
| id: revision | |
| run: | | |
| echo "revision=${{ (github.event_name == 'workflow_dispatch' || github.event_name == 'release') && github.sha || 'dev' }}" >> "$GITHUB_OUTPUT" | |
| - name: Launch workflow via Seqera Platform | |
| uses: seqeralabs/action-tower-launch@v2 | |
| with: | |
| workspace_id: ${{ vars.TOWER_WORKSPACE_ID }} | |
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | |
| compute_env: ${{ vars.TOWER_COMPUTE_ENV }} | |
| revision: ${{ steps.revision.outputs.revision }} | |
| workdir: s3://${{ vars.AWS_S3_BUCKET }}/work/seqinspector/work-${{ steps.revision.outputs.revision }} | |
| nextflow_config: | | |
| plugins { | |
| id 'nf-slack@0.5.0' | |
| } | |
| slack { | |
| enabled = true | |
| bot { | |
| token = '${{ secrets.NFSLACK_BOT_TOKEN }}' | |
| channel = 'seqinspector' | |
| } | |
| onStart { | |
| enabled = false | |
| } | |
| onComplete { | |
| message = ':white_check_mark: *seqinspector/test_full* completed successfully! :tada:' | |
| } | |
| onError { | |
| message = ':x: *seqinspector/seqinspector/test_full* failed :crying_cat_face:' | |
| } | |
| } | |
| parameters: | | |
| { | |
| "outdir": "s3://${{ vars.AWS_S3_BUCKET }}/seqinspector/results-${{ steps.revision.outputs.revision }}" | |
| } | |
| profiles: test_full | |
| - uses: actions/upload-artifact@330a01c490aca151604b8cf639adc76d48f6c5d4 # v5 | |
| with: | |
| name: Seqera Platform debug log file | |
| path: | | |
| tower_action_*.log | |
| tower_action_*.json |