Bug fix: even if one flowcell failed moving on to the next

gerikson · gerikson · commit 2aaaeaa4f795 · 2026-02-03T11:51:44.000+01:00
diff --git a/src/dissectBCL/misc.py b/src/dissectBCL/misc.py
@@ -154,7 +154,7 @@ def getNewFlowCell(
                 logging.critical(
                     f"Aviti run {flowcellName} has OutcomeFailed — pipeline will not start."
                 )
-                return (None, None, None)
+                continue
         # Look for a folder containing the flowcellname.
         # no folder with name -> start the pipeline.
         print("Matching name")

Original file line number	Diff line number	Diff line change
`@@ -154,7 +154,7 @@ def getNewFlowCell(`
`154`	`154`	`logging.critical(`
`155`	`155`	`f"Aviti run {flowcellName} has OutcomeFailed — pipeline will not start."`
`156`	`156`	`)`
`157`		`- return (None, None, None)`
	`157`	`+ continue`
`158`	`158`	`# Look for a folder containing the flowcellname.`
`159`	`159`	`# no folder with name -> start the pipeline.`
`160`	`160`	`print("Matching name")`