-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathblock_codecs.hpp
More file actions
executable file
·293 lines (261 loc) · 10.5 KB
/
Copy pathblock_codecs.hpp
File metadata and controls
executable file
·293 lines (261 loc) · 10.5 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
#pragma once
#include "FastPFor/headers/optpfor.h"
#include "FastPFor/headers/variablebyte.h"
#include "FastPFor/headers/VarIntG8IU.h"
// from integer_encoding_library
#undef ASSERT
#include "io/BitsReader.hpp"
#include "io/BitsWriter.hpp"
using namespace FastPForLib;
namespace quasi_succinct {
class TightVariableByte {
public:
template<uint32_t i>
static uint8_t extract7bits(const uint32_t val) {
return static_cast<uint8_t>((val >> (7 * i)) & ((1U << 7) - 1));
}
template<uint32_t i>
static uint8_t extract7bitsmaskless(const uint32_t val) {
return static_cast<uint8_t>((val >> (7 * i)));
}
static void encode(const uint32_t *in, const size_t length,
uint8_t *out, size_t& nvalue)
{
uint8_t * bout = out;
for (size_t k = 0; k < length; ++k) {
const uint32_t val(in[k]);
if (val < (1U << 7)) {
*bout = static_cast<uint8_t>(val | (1U << 7));
++bout;
} else if (val < (1U << 14)) {
*bout = extract7bits<0> (val);
++bout;
*bout = extract7bitsmaskless<1> (val) | (1U << 7);
++bout;
} else if (val < (1U << 21)) {
*bout = extract7bits<0> (val);
++bout;
*bout = extract7bits<1> (val);
++bout;
*bout = extract7bitsmaskless<2> (val) | (1U << 7);
++bout;
} else if (val < (1U << 28)) {
*bout = extract7bits<0> (val);
++bout;
*bout = extract7bits<1> (val);
++bout;
*bout = extract7bits<2> (val);
++bout;
*bout = extract7bitsmaskless<3> (val) | (1U << 7);
++bout;
} else {
*bout = extract7bits<0> (val);
++bout;
*bout = extract7bits<1> (val);
++bout;
*bout = extract7bits<2> (val);
++bout;
*bout = extract7bits<3> (val);
++bout;
*bout = extract7bitsmaskless<4> (val) | (1U << 7);
++bout;
}
}
nvalue = bout - out;
}
static void encode_single(uint32_t val, std::vector<uint8_t>& out)
{
uint8_t buf[5];
size_t nvalue;
encode(&val, 1, buf, nvalue);
out.insert(out.end(), buf, buf + nvalue);
}
static uint8_t const* decode(const uint8_t *in, uint32_t *out, size_t n)
{
const uint8_t * inbyte = in;
for (size_t i = 0; i < n; ++i) {
unsigned int shift = 0;
for (uint32_t v = 0; ; shift += 7) {
uint8_t c = *inbyte++;
v += ((c & 127) << shift);
if ((c & 128)) {
*out++ = v;
break;
}
}
}
return inbyte;
}
};
struct optpfor_block {
struct codec_type : OPTPFor<4, Simple16<false>> {
uint32_t const* decodeBlock(const uint32_t *in, uint32_t *out, size_t& nvalue)
{
const uint32_t * const initout(out);
const uint32_t b = *in >> (32 - PFORDELTA_B);
const size_t nExceptions = (*in >> (32 - (PFORDELTA_B
+ PFORDELTA_NEXCEPT))) & ((1 << PFORDELTA_NEXCEPT) - 1);
const uint32_t encodedExceptionsSize = *in & ((1 << PFORDELTA_EXCEPTSZ)
- 1);
size_t twonexceptions = 2 * nExceptions;
++in;
if (encodedExceptionsSize > 0)
ecoder.decodeArray(in, encodedExceptionsSize, &exceptions[0],
twonexceptions);
assert(twonexceptions >= 2 * nExceptions);
in += encodedExceptionsSize;
uint32_t * beginout(out);
for (uint32_t j = 0; j < BlockSize; j += 32) {
fastunpack(in, out, b);
in += b;
out += 32;
}
for (uint32_t e = 0, lpos = -1; e < nExceptions; e++) {
lpos += exceptions[e] + 1;
beginout[lpos] |= (exceptions[e + nExceptions] + 1) << b;
}
nvalue = out - initout;
return in;
}
};
static codec_type optpfor_codec;
static TightVariableByte vbyte_codec;
static const uint64_t block_size = codec_type::BlockSize;
static void encode(uint32_t const* in, uint32_t /* sum_of_values */,
size_t n, std::vector<uint8_t>& out)
{
assert(n <= block_size);
std::vector<uint8_t> buf(2 * 4 * block_size);
size_t out_len = buf.size();
if (n == block_size) {
optpfor_codec.encodeBlock(in, reinterpret_cast<uint32_t*>(buf.data()),
out_len);
out_len *= 4;
} else {
vbyte_codec.encode(in, n, buf.data(), out_len);
}
out.insert(out.end(), buf.data(), buf.data() + out_len);
}
static uint8_t const* decode(uint8_t const* in, uint32_t* out,
uint32_t /* sum_of_values */, size_t n)
{
assert(n <= block_size);
size_t out_len = block_size;
uint8_t const* ret;
if (n == block_size) {
ret = reinterpret_cast<uint8_t const*>
(optpfor_codec.decodeBlock(reinterpret_cast<uint32_t const*>(in),
out, out_len));
assert(out_len == n);
} else {
ret = vbyte_codec.decode(in, out, n);
}
return ret;
}
};
struct varint_G8IU_block {
static VarIntG8IU varint_codec;
static TightVariableByte vbyte_codec;
static const uint64_t block_size = 128;
static void encode(uint32_t const* in, uint32_t /* sum_of_values */,
size_t n, std::vector<uint8_t>& out)
{
assert(n <= block_size);
std::vector<uint8_t> buf(2 * 4 * block_size);
size_t out_len = buf.size();
if (n == block_size) {
const uint32_t * src = in;
unsigned char* dst = buf.data();
size_t srclen = n * 4;
size_t dstlen = out_len;
out_len = 0;
while (srclen > 0 && dstlen >= 9) {
out_len += varint_codec.encodeBlock(src, srclen, dst, dstlen);
}
assert(srclen == 0);
} else {
vbyte_codec.encode(in, n, buf.data(), out_len);
}
out.insert(out.end(), buf.data(), buf.data() + out_len);
}
static uint8_t const* decode(uint8_t const* in, uint32_t* out,
uint32_t /* sum_of_values */, size_t n)
{
assert(n <= block_size);
size_t out_len = block_size;
uint8_t const* ret;
if (n == block_size) {
const uint8_t * src = in;
uint32_t* dst = out;
size_t srclen = 2 * out_len * 4;
size_t dstlen = out_len * 4;
out_len = 0;
while (out_len <= (n - 8)) {
out_len += varint_codec.decodeBlock(src, srclen, dst, dstlen);
}
while (out_len < n) {
uint32_t buf[8];
uint32_t* bufptr = buf;
size_t buflen = 8 * 4;
size_t read = varint_codec.decodeBlock(src, srclen, bufptr, buflen);
size_t needed = std::min(read, n - out_len);
memcpy(dst, buf, needed * 4);
dst += needed;
out_len += needed;
}
assert(out_len == n);
ret = src;
} else {
ret = vbyte_codec.decode(in, out, n);
}
return ret;
}
};
struct interpolative_block {
static const uint64_t block_size = 128;
static void encode(uint32_t const* in, uint32_t sum_of_values,
size_t n, std::vector<uint8_t>& out)
{
assert(n <= block_size);
std::vector<uint32_t> inbuf(n);
inbuf[0] = *in;
for (size_t i = 1; i < n; ++i) {
inbuf[i] = inbuf[i - 1] + in[i] + 1;
}
std::vector<uint32_t> buf(2 * block_size);
if (sum_of_values == uint32_t(-1)) {
sum_of_values = inbuf.back() - (n - 1);
TightVariableByte::encode_single(sum_of_values, out);
}
if (n > 1) {
uint32_t high = sum_of_values + n - 1;
integer_encoding::internals::BitsWriter bw(buf.data(), buf.size());
bw.intrpolatvArray(inbuf.data(), n - 1, 0, 0, high);
bw.flush_bits();
uint8_t const* bufptr = (uint8_t const*)buf.data();
out.insert(out.end(), bufptr, bufptr + bw.size() * 4);
}
}
static uint8_t const* decode(uint8_t const* in, uint32_t* out,
uint32_t sum_of_values, size_t n)
{
assert(n <= block_size);
uint8_t const* inbuf = in;
if (sum_of_values == uint32_t(-1)) {
inbuf = TightVariableByte::decode(inbuf, &sum_of_values, 1);
}
uint32_t high = sum_of_values + n - 1;
out[n - 1] = high;
if (n > 1) {
integer_encoding::internals::BitsReader br((uint32_t const*)inbuf, 2 * n);
br.intrpolatvArray(out, n - 1, 0, 0, high);
for (size_t i = n - 1; i > 0; --i) {
out[i] -= out[i - 1] + 1;
}
return (uint8_t const*)(br.pos() + 1);
} else {
return inbuf;
}
}
};
}