Skip to content

Commit fe7df3c

Browse files
committed
0.4.24-beta: SHA256 + README.md
1 parent 36322fc commit fe7df3c

File tree

6 files changed

+16
-9
lines changed

6 files changed

+16
-9
lines changed

README.md

Lines changed: 11 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
11
# AB12PHYLO
22

33
![PyPI license](https://img.shields.io/pypi/l/ab12phylo?color=green)
4-
![github version](https://img.shields.io/static/v1?label=version&message=0.4.23-beta&color=brightgreen&style=flat)
4+
![github version](https://img.shields.io/static/v1?label=version&message=0.4.24-beta&color=brightgreen&style=flat)
55
![PyPI Python version](https://img.shields.io/pypi/pyversions/ab12phylo)
66

77
[AB12PHYLO](https://github.com/lkndl/ab12phylo) is an integrated, easy-to-use pipeline for Maximum Likelihood (ML) phylogenetic tree inference from ABI trace and `FASTA` data.
@@ -22,18 +22,25 @@ The recommended way to install AB12PHYLO is via [conda](https://docs.conda.io/),
2222
conda activate <env>
2323
conda install -c lkndl ab12phylo
2424
```
25-
where `<env>` is your environment. Then install a combination of the external tools you would like to use via
25+
where `<env>` is your environment. Please do not install to `base`! Then install a combination of the external tools you would like to use via
2626
```shell script
2727
conda install -c bioconda "blast>=2.9.0" raxml-ng "gblocks=0.91b" mafft clustalo muscle t-coffee
2828
```
29-
If starting the graphical `ab12phylo` fails with something like `ValueError: Namespace Gtk not available` or `ModuleNotFoundError: No module named 'gi'`, you are missing PyGObject, the python bindings for GTK3:
29+
Mind that some of these tools are not available for Windows as of 12 March 2021.
30+
31+
If starting the graphical `ab12phylo` fails with something like `ValueError: Namespace Gtk not available`, `ModuleNotFoundError: No module named 'gi'` or nothing happens at all (on Windows) you are missing PyGObject, the python bindings for GTK3:
3032
```shell script
3133
conda install -c conda-forge pygobject gtk3
3234
```
35+
If all the icons in the GUI are missing, install some:
36+
```shell script
37+
conda install -c conda-forge adwaita-icon-theme hicolor-icon-theme
38+
```
39+
3340
If you get an `UnsatisfiableError` in conda because of incompatible packages, please use the next approach:
3441

3542
#### b) install to a newly created python3 conda environment
36-
You could run `conda create -n <env> python=3` and proceed as in **a)** or download [this file](/recipe/gtk-env.yaml), then open a terminal in your download folder and set up the environment specified inside via
43+
You could run `conda create -n <env> python=3.x` with `x==6|7|8` and proceed as in **a)** or download [this file](/recipe/gtk-env.yaml) for Linux or [that file](/recipe/win-env.yaml) for Windows, then open a terminal or Anaconda Powershell in your download folder and set up the environment specified inside via
3744
```shell script
3845
conda env create -f gtk-env.yaml
3946
```

ab12phylo/__init__.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@
22

33
__author__ = 'Leo Kaindl'
44
__email__ = '[email protected]'
5-
__version__ = '0.4.23-beta'
5+
__version__ = '0.4.24-beta'
66
__date__ = '11 March 2021'
77
__license__ = 'gpl-3.0'
88
__status__ = 'Beta'

ab12phylo_cmd/__init__.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@
22

33
__author__ = 'Leo Kaindl'
44
__email__ = '[email protected]'
5-
__version__ = '0.4.23-beta'
5+
__version__ = '0.4.24-beta'
66
__date__ = '11 March 2021'
77
__license__ = 'gpl-3.0'
88
__status__ = 'Beta'

recipe/meta.yaml

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,13 +1,13 @@
11
{% set name = "ab12phylo" %}
2-
{% set version = "0.4.23b0" %}
2+
{% set version = "0.4.24b0" %}
33

44
package:
55
name: "{{ name|lower }}"
66
version: "{{ version }}"
77

88
source:
99
url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
10-
sha256: 08c7738d71dedc7560c2baf33e56912f84742bbe5793c16bf331b48833ccf490
10+
sha256: 4b65b74fef971205827fdc9e6a5c65191a2b2d212104e93bbf77ffe845f85321
1111

1212
build:
1313
number: 0

recipe/win-env.yaml

4.26 KB
Binary file not shown.

setup.cfg

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
[metadata]
22
name = ab12phylo
3-
version = 0.4.23-beta
3+
version = 0.4.24-beta
44
author = Leo Kaindl
55
author_email = [email protected]
66
date = 11 March 2021

0 commit comments

Comments
 (0)