-
Notifications
You must be signed in to change notification settings - Fork 3
Closed
Description
With a fresh install of either linkml-map 0.3.8 or 0.3.9-rc1, I get a KeyError when doing anything with the module (in this case, running through Poetry and Python 3.12.3):
$ poetry run linkml-map --help
Traceback (most recent call last):
File "/home/harry/.cache/pypoetry/virtualenvs/brc-schema-ab5IJ14Z-py3.12/bin/linkml-map", line 5, in <module>
from linkml_map.cli.cli import main
File "/home/harry/.cache/pypoetry/virtualenvs/brc-schema-ab5IJ14Z-py3.12/lib/python3.12/site-packages/linkml_map/__init__.py", line 1, in <module>
from linkml_map.transformer.object_transformer import ObjectTransformer
File "/home/harry/.cache/pypoetry/virtualenvs/brc-schema-ab5IJ14Z-py3.12/lib/python3.12/site-packages/linkml_map/transformer/object_transformer.py", line 19, in <module>
from linkml_map.functions.unit_conversion import UnitSystem, convert_units
File "/home/harry/.cache/pypoetry/virtualenvs/brc-schema-ab5IJ14Z-py3.12/lib/python3.12/site-packages/linkml_map/functions/unit_conversion.py", line 28, in <module>
UnitSystem.UCUM: PintUcumRegistry(),
^^^^^^^^^^^^^^^^^^
File "/home/harry/.cache/pypoetry/virtualenvs/brc-schema-ab5IJ14Z-py3.12/lib/python3.12/site-packages/pint/facets/plain/registry.py", line 158, in __call__
obj._after_init()
File "/home/harry/.cache/pypoetry/virtualenvs/brc-schema-ab5IJ14Z-py3.12/lib/python3.12/site-packages/ucumvert/ucum_pint.py", line 351, in _after_init
loaded_files = self.load_definitions(
^^^^^^^^^^^^^^^^^^^^^^
File "/home/harry/.cache/pypoetry/virtualenvs/brc-schema-ab5IJ14Z-py3.12/lib/python3.12/site-packages/pint/facets/plain/registry.py", line 604, in load_definitions
self._helper_dispatch_adder(definition)
File "/home/harry/.cache/pypoetry/virtualenvs/brc-schema-ab5IJ14Z-py3.12/lib/python3.12/site-packages/pint/facets/plain/registry.py", line 502, in _helper_dispatch_adder
adder_func(definition)
File "/home/harry/.cache/pypoetry/virtualenvs/brc-schema-ab5IJ14Z-py3.12/lib/python3.12/site-packages/pint/facets/plain/registry.py", line 556, in _add_alias
unit = unit_dict[definition.name]
~~~~~~~~~^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.12/collections/__init__.py", line 1015, in __getitem__
return self.__missing__(key) # support subclasses that define __missing__
^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.12/collections/__init__.py", line 1007, in __missing__
raise KeyError(key)
KeyError: 'millimeter_Hg'Looks like the issue is upstream in pint and/or somewhere else.
I'll open a quick-fix PR but I'm guessing there's something else going on with unit conversions. Just need a new release.
Metadata
Metadata
Assignees
Labels
No labels