io_lib/.github/workflows/main.yml at master · jkbonfield/io_lib · GitHub

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# Derived from GitHub's c-cpp.yml file
name: Autoconf CI

on: [push, pull_request]

jobs:
  linux-build:

    runs-on: ubuntu-latest

    defaults:
      run:
        # The default for anything that doesn't override it (eg htslib)
        working-directory: ./iolib

    steps:
    - name: io_lib checkout
      uses: actions/checkout@v6
      with:
        path: iolib

    - name: deps
      working-directory: .
      run: |
        sudo apt-get update
        sudo apt-get install -y --no-install-suggests --no-install-recommends zlib1g-dev libdeflate-dev libbz2-dev liblzma-dev libcurl4-gnutls-dev libssl-dev

    - name: htslib checkout
      uses: actions/checkout@v6
      with:
        repository: samtools/htslib
        ref: master
        submodules: true
        path: hidden-htslib

    - name: htslib build
      working-directory: hidden-htslib
      run: |
        autoreconf -i && ./configure --prefix=/usr && make -j5
        sudo make install

    - name: configure
      run: ./bootstrap; ./configure; # CC="gcc -fsanitize=address"

    - name: make
      run: make -j5

    - name: make check
      run: make check

    #- name: make distcheck
    #  run: make distcheck

  osx-build:

    runs-on: macos-latest

    steps:
    - uses: actions/checkout@v6
    - name: Update Homebrew packages
      run: |
        brew update --auto-update
        brew install --overwrite autoconf automake libtool htslib libdeflate
    - name: configure
      run: ./bootstrap; ./configure CPPFLAGS=-I/opt/homebrew/include --with-htslib=/opt/homebrew
    - name: make
      run: make -j5
    - name: make check
      run: make check