medaka_consensus_pipeline update?

[erik-azn]

The last update for the medaka_consensus_pipeline (v1.7.2) was 2023-09-26. Currently, medaka is on v2.1.0 with many new models. Is it possible to update medaka to the newest version with all the currently supported models?

r103_fast_g507
r103_fast_snp_g507
r103_fast_variant_g507
r103_hac_g507
r103_hac_snp_g507
r103_hac_variant_g507
r103_sup_g507
r103_sup_snp_g507
r103_sup_variant_g507
r1041_e82_260bps_fast_g632
r1041_e82_260bps_fast_variant_g632
r1041_e82_260bps_hac_g632
r1041_e82_260bps_hac_v4.0.0
r1041_e82_260bps_hac_v4.1.0
r1041_e82_260bps_hac_variant_g632
r1041_e82_260bps_hac_variant_v4.1.0
r1041_e82_260bps_joint_apk_ulk_v5.0.0
r1041_e82_260bps_sup_g632
r1041_e82_260bps_sup_v4.0.0
r1041_e82_260bps_sup_v4.1.0
r1041_e82_260bps_sup_variant_g632
r1041_e82_260bps_sup_variant_v4.1.0
r1041_e82_400bps_bacterial_methylation
r1041_e82_400bps_fast_g615
r1041_e82_400bps_fast_g632
r1041_e82_400bps_fast_variant_g615
r1041_e82_400bps_fast_variant_g632
r1041_e82_400bps_hac_g615
r1041_e82_400bps_hac_g632
r1041_e82_400bps_hac_v4.0.0
r1041_e82_400bps_hac_v4.1.0
r1041_e82_400bps_hac_v4.2.0
r1041_e82_400bps_hac_v4.3.0
r1041_e82_400bps_hac_v5.0.0
r1041_e82_400bps_hac_v5.0.0_rl_lstm384_dwells
r1041_e82_400bps_hac_v5.0.0_rl_lstm384_no_dwells
r1041_e82_400bps_hac_v5.2.0
r1041_e82_400bps_hac_v5.2.0_rl_lstm384_dwells
r1041_e82_400bps_hac_v5.2.0_rl_lstm384_no_dwells
r1041_e82_400bps_hac_variant_g615
r1041_e82_400bps_hac_variant_g632
r1041_e82_400bps_hac_variant_v4.1.0
r1041_e82_400bps_hac_variant_v4.2.0
r1041_e82_400bps_hac_variant_v4.3.0
r1041_e82_400bps_hac_variant_v5.0.0
r1041_e82_400bps_sup_g615
r1041_e82_400bps_sup_v4.0.0
r1041_e82_400bps_sup_v4.1.0
r1041_e82_400bps_sup_v4.2.0
r1041_e82_400bps_sup_v4.3.0
r1041_e82_400bps_sup_v5.0.0
r1041_e82_400bps_sup_v5.0.0_rl_lstm384_dwells
r1041_e82_400bps_sup_v5.0.0_rl_lstm384_no_dwells
r1041_e82_400bps_sup_v5.2.0
r1041_e82_400bps_sup_v5.2.0_rl_lstm384_dwells
r1041_e82_400bps_sup_v5.2.0_rl_lstm384_no_dwells
r1041_e82_400bps_sup_variant_g615
r1041_e82_400bps_sup_variant_v4.1.0
r1041_e82_400bps_sup_variant_v4.2.0
r1041_e82_400bps_sup_variant_v4.3.0
r1041_e82_400bps_sup_variant_v5.0.0
r104_e81_fast_g5015
r104_e81_fast_variant_g5015
r104_e81_hac_g5015
r104_e81_hac_variant_g5015
r104_e81_sup_g5015
r104_e81_sup_g610
r104_e81_sup_variant_g610
r941_e81_fast_g514
r941_e81_fast_variant_g514
r941_e81_hac_g514
r941_e81_hac_variant_g514
r941_e81_sup_g514
r941_e81_sup_variant_g514
r941_min_fast_g507
r941_min_fast_snp_g507
r941_min_fast_variant_g507
r941_min_hac_g507
r941_min_hac_snp_g507
r941_min_hac_variant_g507
r941_min_sup_g507
r941_min_sup_snp_g507
r941_min_sup_variant_g507
r941_prom_fast_g507
r941_prom_fast_snp_g507
r941_prom_fast_variant_g507
r941_prom_hac_g507
r941_prom_hac_snp_g507
r941_prom_hac_variant_g507
r941_prom_sup_g507
r941_prom_sup_snp_g507
r941_prom_sup_variant_g507
r941_sup_plant_g610
r941_sup_plant_variant_g610