add bamtumors cpp in case need that

Author: Beifang

bamtumors.cpp

@@ -0,0 +1,49 @@
+/*
+ * bampair.cpp for MSIsensor 
+ * Copyright (c) 2013 Beifang Niu && Kai Ye WUGSC All Rights Reserved.
+ *
+ * Permission is hereby granted, free of charge, to any person
+ * obtaining a copy of this software and associated documentation
+ * files (the "Software"), to deal in the Software without
+ * restriction, including without limitation the rights to use,
+ * copy, modify, merge, publish, distribute, sublicense, and/or sell
+ * copies of the Software, and to permit persons to whom the
+ * Software is furnished to do so, subject to the following
+ * conditions:
+ *
+ * The above copyright notice and this permission notice shall be
+ * included in all copies or substantial portions of the Software.
+ *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
+ * OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+ * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
+ * HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
+ * WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+ * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
+ * OTHER DEALINGS IN THE SOFTWARE.
+ */
+
+#include <iostream>
+#include <sstream>
+#include <bitset>
+#include <omp.h>
+
+extern Param paramd;
+
+BamTumors::BamTumors() 
+    : _start(0)
+    , _end(0)
+    , _chr("")
+    , _startSite(NULL)
+    , _endSite(NULL)
+{
+    //xxxx
+
+};
+
+BamTumors::~BamTumors()
+{
+    //xxx
+};
+