virtual memory and msi plot bugs fixed

Beifang · Beifang · commit de3edb71a8c2 · 2018-12-03T17:24:34.000+08:00
diff --git a/refseq.cpp b/refseq.cpp
@@ -84,6 +84,7 @@ bool RefSeq::PouroutBuffer(std::ofstream &fout) {
         fout << homosBuffer[i].transfer << "\n";
     }
     homosBuffer.clear();
+    totalSites = 0;
 }
 
 // Load next chromosome
diff --git a/test/msi_score_and_status_distribution.pdf b/test/msi_score_and_status_distribution.pdf
diff --git a/test/plot.r b/test/plot.r
@@ -17,6 +17,7 @@ if(nn == 2){
     #beeswarm(score~state, data=m, method='swarm', pch=16, ylim=c(0, 100), xlab='Sample group', ylab='MSI score(%)', main='MSI score', cex=0.8, las=0, do.plot=T, add=F, at=xs, col=cols[xs], spacing=0.8, xaxs='i', yaxs='i', lwd=.75)
 }else if(nn == 1){
     colnames(m)<-c('score')
+    cols <- colors<-colorRampPalette(brewer.pal(12, "Paired"))(1)
     xs<-nrow(1)
 
     pdf(file=args[2])

Original file line number	Diff line number	Diff line change
`@@ -84,6 +84,7 @@ bool RefSeq::PouroutBuffer(std::ofstream &fout) {`
`84`	`84`	`fout << homosBuffer[i].transfer << "\n";`
`85`	`85`	`}`
`86`	`86`	`homosBuffer.clear();`
	`87`	`+ totalSites = 0;`
`87`	`88`	`}`
`88`	`89`
`89`	`90`	`// Load next chromosome`