bug: When setting `report_tasks` on claude code module, setup is incomplete

[solidDoWant]

When using the Claude Code module standalone mode (setting report_tasks = false according to the docs), several Claude Code setup items are missing:

• hasCompletedOnboarding is not set, causing claude to try and force a browser login even if an API token or oauth token is provided
• projects is not set, causing a "trust on first use" prompt for directories
• autoUpdaterStatus is not set based on values provided to the module
• bypassPermissionsModeAccepted is not set based on values provided to the module

If hasCompletedOnboarding is set after the agent API process is started, any messages sent via the web UI app cause it to hang.

[DevelopmentCats]

I think this is because we don't run the coder mcp configure command unless report_tasks is set to true anymore, and this command does more than we thought under the hood to configure claude-code outside of our module.

I will look into the best way to address this promptly