setting up setuptools to install subsbml package (not yet working)

Author: ayush9pandey

LICENSE

@@ -0,0 +1,29 @@
+BSD 3-Clause License
+
+Copyright (c) 2018, Build-A-Cell
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+* Redistributions of source code must retain the above copyright notice, this
+  list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright notice,
+  this list of conditions and the following disclaimer in the documentation
+  and/or other materials provided with the distribution.
+
+* Neither the name of the copyright holder nor the names of its
+  contributors may be used to endorse or promote products derived from
+  this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

MANIFEST.in

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+include examples/*.py
+include tutorials/*.py
+include models/
+include README.md
+include LICENSE
+exclude subsbml.egg-info/*

modules/SimpleModel.py renamed to build/lib/subsbml/SimpleModel.py

@@ -1,8 +1,8 @@
 from libsbml import *
 import warnings
 
-from modules.setIdFromNames import *
-from modules.SimpleReaction import *
+from .setIdFromNames import *
+from .SimpleReaction import *
 
 latestLevel = 3
 latestVersion = 1

modules/SimpleReaction.py renamed to build/lib/subsbml/SimpleReaction.py

@@ -1,5 +1,5 @@
 # Import all required libraries
-from modules.Subsystem import *
+from .Subsystem import *
 
 # The latest level and version of SBML 
 # These are used to convert the models given as input to the latest SBML version

modules/Subsystem.py renamed to build/lib/subsbml/Subsystem.py

@@ -0,0 +1,8 @@
+
+from .System import System 
+from .Subsystem import *
+from .SimpleModel import *
+from .SimpleReaction import *
+from .utilityFunctions import *
+from .setIdFromNames import *
+

modules/System.py renamed to build/lib/subsbml/System.py

@@ -7,7 +7,7 @@
 import matplotlib.pyplot as plt
 from libsbml import *
 
-from modules.SimpleModel import * 
+from .SimpleModel import * 
 
 latestLevel = 3
 latestVersion = 1

build/lib/subsbml/__init__.py

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+from setuptools import setup
+
+# Get the long description from the README file
+with open('README.md') as fp:
+    long_description = ''
+    # long_description = fp.read()
+
+setup(
+    name = 'subsbml',
+    version = '0.1',
+    author = 'BuildACell',
+    author_email = '[email protected]',
+    url = 'https://github.com/BuildACell/subsbml',
+    description = 'SBML subsystem interaction modeling toolbox in Python',
+    long_description = long_description,
+    packages = ['subsbml'],
+    classifiers = [
+        'Development Status :: 3 - Alpha',
+        'Intended Audience :: Science/Research',
+        'Intended Audience :: Developers',
+        'License :: OSI Approved :: BSD License',
+        'Programming Language :: Python :: 3',
+        'Programming Language :: Python :: 3.6',
+        'Topic :: Software Development',
+        'Topic :: Scientific/Engineering',
+        'Operating System :: POSIX',
+        'Operating System :: Unix'
+        'Operating System :: MacOS'
+        'Operating System :: Microsoft :: Windows'
+    ],
+)