replace pbr by setuptools setup.py

Author: oschwengers

README.md

@@ -34,7 +34,7 @@ download:
 
 ## Getting started for development
 
-Python dependency: >=3.8
+Python dependency: >=3.9
 
 Setup a virtualenv for development and install it in editable mode
 

requirements.txt

@@ -1,6 +1,55 @@
-from setuptools import setup
+from os import path
+from setuptools import setup, find_packages
+
+import bakrep
+
+# Get the long description from the README file
+setup_dir = path.abspath(path.dirname(__file__))
+with open(path.join(setup_dir, 'README.md'), encoding='utf-8') as f:
+    long_description = f.read()
+
 
 setup(
-    setup_requires=['pbr'],
-    pbr=True
-)
+    name='bakrep-cli',
+    version=bakrep.__version__,
+    description='BakRep CLI: a commandline tool for the batch download of BakRep datasets',
+    keywords=['bioinformatics', 'annotation', 'bacteria', 'genomes', 'bakrep'],
+    long_description=long_description,
+    long_description_content_type='text/markdown',
+    license='GPLv3',
+    author='Lukas Jelonek',
+    author_email='[email protected]',
+    url='https://bakrep.computational.bio',
+    packages=find_packages(include=['bakrep']),
+    python_requires='>=3.9',
+    include_package_data=False,
+    zip_safe=False,
+    install_requires=[
+        'requests >= 2.32'
+    ],
+    entry_points={
+        'console_scripts': [
+            'bakrep=bakrep.cli:entrypoint'
+        ]
+    },
+    classifiers=[
+        'Operating System :: POSIX :: Linux',
+        'Programming Language :: Python :: 3 :: Only',
+        'Programming Language :: Python :: 3.9',
+        'Programming Language :: Python :: 3.10',
+        'Programming Language :: Python :: 3.11',
+        'Programming Language :: Python :: 3.12',
+        'Development Status :: 5 - Production/Stable',
+        'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
+        'Topic :: Scientific/Engineering :: Bio-Informatics',
+        'Environment :: Console',
+        'Intended Audience :: Science/Research',
+        'Natural Language :: English'
+    ],
+    project_urls={
+        'Documentation': 'https://github.com/ag-computational-bio/bakrep-cli',
+        'Source': 'https://github.com/ag-computational-bio/bakrep-cli',
+        'Bug Reports': 'https://github.com/ag-computational-bio/bakrep-cli/issues',
+        'CI': 'https://github.com/ag-computational-bio/bakrep-cli/actions'
+    },
+)