update docs and all of that.

Author: ChrisRackauckas

.Rbuildignore

@@ -4,3 +4,5 @@
 ^appveyor\.yml$
 ^cran-comments\.md$
 ^CRAN-RELEASE$
+^doc$
+^Meta$

.gitignore

@@ -2,3 +2,5 @@
 .Rhistory
 .RData
 inst/doc
+doc
+Meta

DESCRIPTION

@@ -17,7 +17,7 @@ SystemRequirements: Julia (>= 1.5), DifferentialEquations.jl, ModelingToolkit.jl
 Imports:
   JuliaCall,
   stringr
-RoxygenNote: 6.1.1
+RoxygenNote: 7.1.1
 Suggests: testthat,
     knitr,
     rmarkdown

NAMESPACE

@@ -1,3 +1,6 @@
 # Generated by roxygen2: do not edit by hand
 
 export(diffeq_setup)
+export(diffeqgpu_setup)
+export(jitoptimize_ode)
+export(jitoptimize_sde)

R/diffeqr.R

@@ -62,7 +62,7 @@ diffeq_setup <- function (...){
 jitoptimize_ode <- function (de,prob){
   odesys = de$modelingtoolkitize(prob)
   JuliaCall::julia_assign("odesys", odesys)
-  jul_f = JuliaCall::julia_eval("jitf = eval(ODEFunctionExpr{true}(odesys,jac=true))")
+  jul_f = JuliaCall::julia_eval("jitf = ODEFunction(odesys,jac=true)")
   JuliaCall::julia_assign("u0", prob$u0)
   JuliaCall::julia_assign("p", prob$p)
   JuliaCall::julia_assign("tspan", prob$tspan)