Merge remote-tracking branch 'origin/mat_index_bug' into view_axis_length

Author: dingraha

.github/dependabot.yml

@@ -0,0 +1,7 @@
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "weekly"

.github/workflows/ci.yml

@@ -15,22 +15,20 @@ jobs:
       fail-fast: false
       matrix:
         version:
-          - '1.6'
-          - '1.8'
-          - '1.9'
           - '1.10'
           - '1' # Leave this line unchanged. '1' will automatically expand to the latest stable 1.x release of Julia.
+          - 'pre'
         os:
           - ubuntu-latest
         arch:
           - x64
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}
-      - uses: actions/cache@v1
+      - uses: actions/cache@v4
         env:
           cache-name: cache-artifacts
         with:
@@ -43,6 +41,6 @@ jobs:
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1
       - uses: julia-actions/julia-processcoverage@v1
-      - uses: codecov/codecov-action@v1
+      - uses: codecov/codecov-action@v5
         with:
           file: lcov.info

.github/workflows/docs.yml

@@ -11,10 +11,10 @@ jobs:
   build:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@latest
         with:
-          version: '1.6'
+          version: '1.10'
       - name: Install dependencies
         run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
       - name: Build and deploy

.github/workflows/downgrade.yml

@@ -0,0 +1,26 @@
+name: Downgrade
+on:
+  pull_request:
+    branches:
+      - main
+    paths-ignore:
+      - 'docs/**'
+  push:
+    branches:
+      - main
+    paths-ignore:
+      - 'docs/**'
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        version: ['1.10']
+    steps:
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
+        with:
+          version: ${{ matrix.version }}
+      - uses: cjdoris/julia-downgrade-compat-action@v1
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1

NEWS.md

@@ -1,5 +1,5 @@
 # ComponentArrays.jl NEWS
-Notes on new features (minor releases). For more details on bugfixes and non-feature-adding changes (patch releases), check out the [releases page](https://github.com/jonniedie/ComponentArrays.jl/releases).
+Notes on new features (minor releases). For more details on bugfixes and non-feature-adding changes (patch releases), check out the [releases page](https://github.com/SciML/ComponentArrays.jl/releases).
 
 ### v0.15.0
 - Unpack array components as `StaticArray`s!
@@ -27,7 +27,7 @@ ComponentVector{Float64,SubArray...}(e = 2.0, f = [6.0, 30.0])
 
 ### v0.12.0
 - Multiple symbol indexing!
-  - Use either an `Array` or `Tuple` of `Symbol`s to extract multiple named components into a new `ComponentArray
+  - Use either an `Array` or `Tuple` of `Symbol`s to extract multiple named components into a new `ComponentArray`
   - It's fast!
 ```julia
 julia> ca = ComponentArray(a=5, b=[4, 1], c=(a=2, b=[6, 30.0]))
@@ -118,7 +118,7 @@ julia> @btime sum(x.a + x.b for x in $ca.c.a);
 - Easier DifferentialEquations plotting!
     - Automatic legend labeling!
     - `Symbol` and `String` support for the `vars` plot keyword!
-    - See it in an action [here](https://github.com/jonniedie/ComponentArrays.jl/blob/master/docs/src/examples/adaptive_control.md)!
+    - See it in an action [here](https://github.com/SciML/ComponentArrays.jl/blob/main/docs/src/examples/adaptive_control.md)!
 
 ### v0.5.0
 - Constructor for making new `ComponentVector`s with additional fields! Watch out, it's slow!
@@ -131,7 +131,7 @@ ComponentVector{Int64}(a = 5, b = [1, 2], c = [0 0; 0 0], d = (a = 2, b = 10))
 ```
 
 ### v0.4.0
-- Zygote rules for DiffEqFlux support! Check out [the docs](https://jonniedie.github.io/ComponentArrays.jl/dev/examples/DiffEqFlux/) for an example!
+- Zygote rules for DiffEqFlux support! Check out [the docs](https://sciml.github.io/ComponentArrays.jl/dev/examples/DiffEqFlux/) for an example!
 
 ### v0.3.0
 - Matrix and higher-dimensional array components!

Project.toml

@@ -1,74 +1,58 @@
 name = "ComponentArrays"
 uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66"
 authors = ["Jonnie Diegelman <[email protected]>"]
-version = "0.15.17"
+version = "0.15.22"
 
 [deps]
+Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
 ArrayInterface = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
 ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
+ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
 ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
 Functors = "d9f16b24-f501-4c13-a1f2-28368ffc5196"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
-PackageExtensionCompat = "65ce6f38-6b18-4e1d-a461-8949797d7930"
 StaticArrayInterface = "0d7ed370-da01-4f52-bd93-41d350b8b718"
 StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
 
 [weakdeps]
-Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
-ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
 GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
+KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
 Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2"
+Reactant = "3c362404-f566-11ee-1572-e11a4b42c853"
 RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd"
 ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
 SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
 Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
-TruncatedStacktraces = "781d530d-4396-4725-bb49-402e4bee1e77"
 Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
 [extensions]
-ComponentArraysAdaptExt = "Adapt"
-ComponentArraysConstructionBaseExt = "ConstructionBase"
 ComponentArraysGPUArraysExt = "GPUArrays"
+ComponentArraysKernelAbstractionsExt = "KernelAbstractions"
 ComponentArraysOptimisersExt = "Optimisers"
+ComponentArraysReactantExt = "Reactant"
 ComponentArraysRecursiveArrayToolsExt = "RecursiveArrayTools"
 ComponentArraysReverseDiffExt = "ReverseDiff"
 ComponentArraysSciMLBaseExt = "SciMLBase"
 ComponentArraysTrackerExt = "Tracker"
-ComponentArraysTruncatedStacktracesExt = "TruncatedStacktraces"
 ComponentArraysZygoteExt = "Zygote"
 
 [compat]
-Adapt = "3, 4"
-ArrayInterface = "6, 7"
-ChainRulesCore = "0.8, 0.9, 0.10, 1"
+Adapt = "4.1"
+ArrayInterface = "7.17.1"
+ChainRulesCore = "1.25"
 ConstructionBase = "1"
-ForwardDiff = "0.10"
-Functors = "0.4.4"
-GPUArrays = "8, 9, 10"
-LinearAlgebra = "1"
-Optimisers = "0.3"
-PackageExtensionCompat = "1"
-RecursiveArrayTools = "2, 3"
-ReverseDiff = "1"
-SciMLBase = "1, 2"
+ForwardDiff = "0.10.36"
+Functors = "0.4.12, 0.5"
+GPUArrays = "10.3.1, 11"
+KernelAbstractions = "0.9.29"
+LinearAlgebra = "1.10"
+Optimisers = "0.3, 0.4"
+Reactant = "0.2.15"
+RecursiveArrayTools = "3.8"
+ReverseDiff = "1.15"
+SciMLBase = "2"
 StaticArrayInterface = "1"
-StaticArraysCore = "1"
-Test = "1"
-Tracker = "0.2"
-TruncatedStacktraces = "1.4"
-Zygote = "0.6"
-julia = "1.6"
-
-[extras]
-Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
-ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
-ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
-GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
-Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2"
-RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd"
-ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
-SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
-Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
-TruncatedStacktraces = "781d530d-4396-4725-bb49-402e4bee1e77"
-Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
+StaticArraysCore = "1.4"
+Tracker = "0.2.37"
+Zygote = "0.6.70, 0.7"
+julia = "1.10"

README.md

@@ -1,22 +1,22 @@
 # ComponentArrays.jl
 ![](assets/logo.png)
 
-| **Documentation**                                                               | **Build Status**                                                                                |
-|:-------------------------------------------------------------------------------:|:-----------------------------------------------------------------------------------------------:|
+| **Documentation**                                                         | **Build Status**                                            |
+|:-------------------------------------------------------------------------:|:-----------------------------------------------------------:|
 | [![][docs-stable-img]][docs-stable-url] [![][docs-dev-img]][docs-dev-url] | [![][build-img]][build-url] [![][codecov-img]][codecov-url] |
 
 
 [docs-dev-img]: https://img.shields.io/badge/docs-latest-blue.svg
-[docs-dev-url]: https://jonniedie.github.io/ComponentArrays.jl/dev
+[docs-dev-url]: https://sciml.github.io/ComponentArrays.jl/dev
 
 [docs-stable-img]: https://img.shields.io/badge/docs-stable-blue.svg
-[docs-stable-url]: https://jonniedie.github.io/ComponentArrays.jl/stable
+[docs-stable-url]: https://sciml.github.io/ComponentArrays.jl/stable
 
-[build-img]: https://img.shields.io/github/actions/workflow/status/jonniedie/ComponentArrays.jl/ci.yml
-[build-url]: https://github.com/jonniedie/docs/ComponentArrays.jl/workflows/ci.yml
+[build-img]: https://img.shields.io/github/actions/workflow/status/SciML/ComponentArrays.jl/ci.yml
+[build-url]: https://github.com/SciML/ComponentArrays.jl/actions/workflows/ci.yml
 
-[codecov-img]: https://img.shields.io/codecov/c/github/jonniedie/ComponentArrays.jl
-[codecov-url]: https://codecov.io/gh/jonniedie/ComponentArrays.jl
+[codecov-img]: https://img.shields.io/codecov/c/github/SciML/ComponentArrays.jl
+[codecov-url]: https://codecov.io/gh/SciML/ComponentArrays.jl
 
 The main export of this package is the ````ComponentArray```` type. "Components" of ````ComponentArray````s
 are really just array blocks that can be accessed through a named index. This will create a new ```ComponentArray``` whose data is a view into the original,
@@ -27,7 +27,7 @@ in [DifferentialEquations.jl](https://github.com/SciML/DifferentialEquations.jl)
 [Optim.jl](https://github.com/JuliaNLSolvers/Optim.jl), but anything that requires
 flat vectors is fair game.
 
-Check out the [NEWS](https://github.com/jonniedie/ComponentArrays.jl/blob/master/NEWS.md) for new features by minor release version.
+Check out the [NEWS](https://github.com/SciML/ComponentArrays.jl/blob/master/NEWS.md) for new features by minor release version.
 
 
 ## General use
@@ -45,7 +45,7 @@ julia> x[8]
 400.0
 
 julia> collect(x)
-10-element Array{Float64,1}:
+10-element Vector{Float64}:
    5.0
   20.0
    0.0