fix clean commands

Author: thomashebrard

.pipelex/inference/deck/cocode_deck.toml

@@ -18,6 +18,8 @@ inputs = { doc_file = "DocumentationFile", repo_map = "RepositoryMap" }
 output = "FilePath"
 multiple_output = true
 llm = "llm_for_large_text"
+structuring_method = "preliminary_text"
+llm_to_structure = "cheap_llm_for_object"
 system_prompt = """
 Extract code elements mentioned in docs (classes, functions, commands) and find their actual implementations or usages in the codebase.
 """

cocode/pipelex_libraries/pipelines/doc_proofread/doc_proofread.plx

@@ -68,6 +68,7 @@ def read_file_content(working_memory: WorkingMemory) -> ListContent[CodebaseFile
             codebase_files.append(
                 CodebaseFileContent(file_path=file_path.path, file_content=f"# File not found or unreadable: {file_path.path}\n# Error: {str(e)}")
             )
+    print("codebase_files", codebase_files)
 
     return ListContent[CodebaseFileContent](items=codebase_files)
 

cocode/pipelex_libraries/pipelines/doc_proofread/file_utils.py

@@ -6,7 +6,8 @@
 
 import typer
 from pipelex import log
-from pipelex.pipe_works.pipe_dry import dry_run_all_pipes
+from pipelex.hub import get_pipe_provider
+from pipelex.pipe_works.pipe_dry import dry_run_pipes
 from pipelex.pipelex import Pipelex
 
 validation_app = typer.Typer(
@@ -21,14 +22,14 @@
 def validate() -> None:
     """Run the setup sequence and validate all pipelines."""
     Pipelex.get_instance().validate_libraries()
-    asyncio.run(dry_run_all_pipes())
+    asyncio.run(dry_run_pipes(get_pipe_provider().get_pipes()))
     log.info("Setup sequence passed OK, config and pipelines are validated.")
 
 
 @validation_app.command("dry-run")
 def dry_run() -> None:
     """Run dry validation of all pipelines without full setup."""
-    asyncio.run(dry_run_all_pipes())
+    asyncio.run(dry_run_pipes(get_pipe_provider().get_pipes()))
     log.info("Dry run completed successfully.")
 
 

cocode/validation_cli.py

@@ -16,7 +16,7 @@ classifiers = [
     "Operating System :: OS Independent",
 ]
 
-dependencies = ["pipelex[anthropic,google,bedrock]>=0.10.2", "PyGithub==2.4.0"]
+dependencies = ["pipelex[anthropic,google,google-genai,bedrock]==0.10.2", "PyGithub==2.4.0"]
 
 [project.optional-dependencies]
 docs = [

pyproject.toml

@@ -1,7 +1,7 @@
 import asyncio
 
-from pipelex.hub import get_required_concept
-from pipelex.pipe_works.pipe_dry import dry_run_all_pipes
+from pipelex.hub import get_pipe_provider, get_required_concept
+from pipelex.pipe_works.pipe_dry import dry_run_pipes
 
 
 def test_boot():
@@ -15,4 +15,4 @@ def test_concept_exists():
 def test_dry_run_all_pipes():
     """Test that dry_run_all_pipes() runs successfully without errors."""
     # This should not raise any exceptions
-    asyncio.run(dry_run_all_pipes())
+    asyncio.run(dry_run_pipes(get_pipe_provider().get_pipes()))