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Merge branch 'main' into v2_multimodel
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doc/v2/documentation_data_format.rst

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@@ -75,9 +75,6 @@ format (Figure 2), including:
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- A :ref:`grouping file <v2_problem_yaml>` that lists all relevant files and
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provides additional information including extensions [YAML].
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- (optional) A simulation file, which has the same format as the measurement
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file, but containing data generated by model simulations [TSV].
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- (optional) A :ref:`mapping file <v2_mapping_table>` which allows mapping
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PEtab entity IDs to entity IDs in the model, which might not have valid
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PEtab IDs themselves, and to provide additional annotations [TSV].
@@ -542,6 +539,20 @@ Detailed field description
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For problems with a single model, this column is ignored, and the same model
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is used for all simulations.
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.. _v2_simulation_table:
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Simulation table
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~~~~~~~~~~~~~~~~
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For some applications, it is useful to provide a simulation file that contains
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the simulation results of the model for the same time points as the
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measurements. This is useful, for example, for comparing the simulation results
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with the measurements, or for assessing simulation reproducibility across tools.
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The simulation table is provided as a tab-separated values (TSV) file with
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the same structure as the measurement table, only that the
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``measurement`` column is replaced by the ``simulation`` column that contains
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the simulation results.
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.. _v2_observables_table:
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