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adding docker workflow
Signed-off-by: Paulito Palmes, PhD <ppalmes@gmail.com>
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‎docker/Dockerfile‎

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FROM debian:buster AS build
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LABEL maintainer="paulpalmes@ie.ibm.com"
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WORKDIR /
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RUN set -ex
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RUN apt-get update --allow-releaseinfo-change && apt-get -y upgrade && \
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apt-get install -y tzdata git wget build-essential
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RUN apt-get clean -y && apt-get autoremove -y && apt-get autoclean -y
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RUN wget https://julialang-s3.julialang.org/bin/linux/x64/1.1/julia-1.1.1-linux-x86_64.tar.gz && tar xzvf julia-1.1.1-linux-x86_64.tar.gz
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ENV PATH="$PATH:/julia-1.1.1/bin"
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RUN git clone https://github.com/JuliaLang/PackageCompiler.jl.git
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COPY main.jl /
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RUN /julia-1.1.1/bin/julia -e 'using Pkg; pkg"up; add TSML#docker_packagecompiler PackageCompiler#sd-notomls ArgParse"'
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RUN /julia-1.1.1/bin/julia -e 'using TSML, PackageCompiler; sysnew,sysold = compile_incremental(:TSML;install=true); cp(sysnew,sysold,force=true)'
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RUN /julia-1.1.1/bin/julia /PackageCompiler.jl/juliac.jl -vae /main.jl
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ENTRYPOINT ["/builddir/main"]
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#FROM debian:buster
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#WORKDIR /
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#COPY --from=build /julia-1.1.1 /julia-1.1.1
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#COPY --from=build /root/.julia /root/.julia
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#ENV PATH="$PATH:/julia-1.1.1/bin"
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#COPY tsmldockermain.jl /tsmldockermain.jl
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#RUN chmod +x /tsmldockermain.jl
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#ENTRYPOINT ["/tsmldockermain.jl"]

‎docker/Dockerfile.incremental‎

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FROM debian:buster AS build
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LABEL maintainer="paulpalmes@ie.ibm.com"
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WORKDIR /
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RUN set -ex
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RUN apt-get update --allow-releaseinfo-change && apt-get -y upgrade && \
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apt-get install -y tzdata git wget build-essential
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RUN apt-get clean -y && apt-get autoremove -y && apt-get autoclean -y
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RUN wget https://julialang-s3.julialang.org/bin/linux/x64/1.1/julia-1.1.1-linux-x86_64.tar.gz && tar xzvf julia-1.1.1-linux-x86_64.tar.gz
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RUN /julia-1.1.1/bin/julia -e 'using Pkg; pkg"up; add TSML#docker_packagecompiler PackageCompiler#sd-notomls"'
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RUN /julia-1.1.1/bin/julia -e 'using TSML, PackageCompiler; sysnew,sysold = compile_incremental(:TSML;install=true); cp(sysnew,sysold,force=true)'
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FROM debian:buster
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WORKDIR /
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COPY --from=build /julia-1.1.1 /julia-1.1.1
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COPY --from=build /root/.julia /root/.julia
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ENV PATH="$PATH:/julia-1.1.1/bin"
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COPY tsmldockermain.jl /tsmldockermain.jl
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RUN chmod +x /tsmldockermain.jl
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ENTRYPOINT ["/tsmldockermain.jl"]

‎docker/NotebookDockerfile‎

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From ubuntu:18.04
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LABEL maintainer="paulpalmes@ie.ibm.com"
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WORKDIR /
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RUN set -ex
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ENV CONDA_JL_VERSION "3"
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ENV PYTHON ""
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RUN apt-get update && apt-get install -y --allow-unauthenticated tzdata
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RUN apt-get update && apt-get -y --allow-unauthenticated upgrade && \
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apt-get install -y --allow-unauthenticated git r-base r-base-dev r-recommended wget
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RUN apt-get clean -y && apt-get autoremove -y && apt-get autoclean -y
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RUN wget https://julialang-s3.julialang.org/bin/linux/x64/1.0/julia-1.0.3-linux-x86_64.tar.gz
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RUN tar xzvf julia-1.0.3-linux-x86_64.tar.gz
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RUN /julia-1.0.3/bin/julia -e 'using Pkg;Pkg.add("Conda");using Conda'
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RUN /julia-1.0.3/bin/julia -e 'using Pkg;Pkg.add(PackageSpec(url="https://github.com/IBM/TSML.jl",rev="master"));Pkg.build("TSML");using TSML'
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RUN /julia-1.0.3/bin/julia -e 'using Pkg;Pkg.add(["DataFrames","CSV","Plots","GR"]);using CSV;using Plots;using DataFrames;using GR'
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RUN /julia-1.0.3/bin/julia -e 'using Pkg;Pkg.add("IJulia");using IJulia'
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RUN /root/.julia/conda/3/bin/conda install -y jupyter
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RUN /root/.julia/conda/3/bin/conda install -y jupyterlab
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COPY testdata.csv TSML_Demo.ipynb ./
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# docker build -t tsml . && docker run --rm -p 8888:8888 -p 4040:4040 -it tsml
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CMD ["/root/.julia/conda/3/bin/jupyter-lab","--ip=0.0.0.0","--allow-root","--NotebookApp.token=''","--NotebookApp.password=''","--no-browser","TSML_Demo.ipynb"]
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‎docker/main.jl‎

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using TSML
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using TSML.ArgumentParsers
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Base.@ccallable function julia_main(ARGS::Vector{String})::Cint
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tsmlmain()
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end

‎docker/notes.txt‎

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https://nextjournal.com/julia-environments/datascience-environment?change-id=CTtF6xQrPhCRkb9u3cQneo&node-id=758ec5ab-8cc7-4e01-ba79-3f95ada429b0
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https://github.com/JuliaLang/PackageCompiler.jl/issues/215
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]add TSML#docker_packagecompiler
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]add PackageCompiler#sd-notomls
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using PackageCompiler
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compile_incremental(:TSML,install=true)

‎docker/run.jl‎

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#!/julia-1.0.3/bin/julia
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using TSML
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using DataFrames
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using TSML.CLIWrappers
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function runme(args)
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res=DataFrames.DataFrame()
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if length(args) == 0
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println("no input/output filename")
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println("syntax: /run.jl input output dateformat")
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elseif length(args) == 1
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res=tsmlrun(args[1])
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elseif length(args) == 2
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res=tsmlrun(args[1],args[2])
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elseif length(args) == 3
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res=tsmlrun(args[1],args[2],args[3])
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elseif length(args) == 4
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res=tsmlrun(args[1],args[2],args[3],args[4])
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end
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res
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end
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runme(ARGS)

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