book.bib

@Book{xie2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {http://yihui.org/knitr/},
}

@Manual{r2021,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2021},
  url = {https://www.R-project.org/},
}

@article{orchestrating2015,
   author = {Huber, W. and Carey, V. J. and Gentleman, R. and Anders, S. and Carlson, M. and Carvalho, B. S. and Bravo, H. C. and Davis, S. and Gatto, L. and Girke, T. and Gottardo, R. and Hahne, F. and Hansen, K. D. and Irizarry, R. A. and Lawrence, M. and Love, M. I. and MacDonald, J. and Obenchain, V. and Oles, A. K. and Pages, H. and Reyes, A. and Shannon, P. and Smyth, G. K. and Tenenbaum, D. and Waldron, L. and Morgan, M.},
   title = {Orchestrating high-throughput genomic analysis with Bioconductor},
   journal = {Nat Methods},
   volume = {12},
   number = {2},
   pages = {115-21},
   ISSN = {1548-7105 (Electronic)
1548-7091 (Linking)},
   DOI = {10.1038/nmeth.3252},
   url = {https://www.ncbi.nlm.nih.gov/pubmed/25633503},
   year = {2015},
   type = {Journal Article}
}

@ARTICLE{Soneson2025-zr,
  title     = "Eleven quick tips for writing a Bioconductor package",
  author    = "Soneson, Charlotte and Shepherd, Lori and Ramos, Marcel and
               Rue-Albrecht, Kevin and Rainer, Johannes and Pag\`{e}s, Herv\'{e}
               and Carey, Vincent J",
  journal   = "PLoS Comput. Biol.",
  publisher = "Public Library of Science",
  volume    =  21,
  number    =  3,
  pages     = "e1012856",
  month     =  mar,
  year      =  2025,
  doi       = "10.1371/journal.pcbi.1012856"
}