@@ -346,10 +346,11 @@ def renderSectionClient(stack, rootDirectory, zs, scale=None,
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maxIntensity = None , minIntensity = None , bounds = None ,
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format = None , channel = None , customOutputFolder = None ,
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customSubFolder = None , padFileNamesWithZeros = None ,
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- doFilter = None , fillWithNoise = None , imageType = None ,
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- subprocess_mode = None , host = None , port = None , owner = None ,
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- project = None , client_script = None , memGB = None ,
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- render = None , ** kwargs ):
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+ resolutionUnit = None , doFilter = None , fillWithNoise = None ,
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+ imageType = None , subprocess_mode = None , host = None ,
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+ port = None , owner = None , project = None ,
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+ client_script = None , memGB = None , render = None ,
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+ ** kwargs ):
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"""run RenderSectionClient.java
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Parameters
@@ -379,6 +380,9 @@ def renderSectionClient(stack, rootDirectory, zs, scale=None,
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folder to save all images in under outputFolder (overrides default of none)
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padFileNamesWithZeros: bool
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whether to pad file names with zeros to make sortable
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+ resolutionUnit: str
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+ if format is tiff and unit is specified (e.g. as 'nm'), include resolution data
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+ in rendered tiff headers.
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imageType: int
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8,16,24 to specify what kind of image type to save
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doFilter : str
@@ -418,9 +422,11 @@ def renderSectionClient(stack, rootDirectory, zs, scale=None,
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get_param (customOutputFolder , '--customOutputFolder' ) +
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get_param (imageType , '--imageType' ) +
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get_param (channel , '--channels' ) +
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- get_param (customSubFolder , '--customSubFolder' ) +
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+ get_param (customSubFolder , '--customSubFolder' ) +
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get_param (padFileNamesWithZeros , '--padFileNamesWithZeros' ) +
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+ get_param (resolutionUnit , '--resolutionUnit' ) +
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bound_param + zs )
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+
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call_run_ws_client ('org.janelia.render.client.RenderSectionClient' ,
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memGB = memGB , client_script = client_script ,
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subprocess_mode = subprocess_mode , add_args = argvs ,
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